Uses of Interface
pal.treesearch.SearchMonitor
Packages that use SearchMonitor
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Uses of SearchMonitor in pal.treesearch
Methods in pal.treesearch that return SearchMonitorModifier and TypeMethodDescriptionstatic final SearchMonitorSearchMonitor.Utils.createNullMonitor()Methods in pal.treesearch with parameters of type SearchMonitorModifier and TypeMethodDescriptiondoubleGeneralLikelihoodSearcher.optimiseAllFullHeirarchy(StoppingCriteria mainStopper, StoppingCriteria subStopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor) doubleGeneralLikelihoodSearcher.optimiseAllPlusSubstitutionModel(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, MultivariateMinimum substitutionModelMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, int substitutionModelOptimiseFrequency, MinimiserMonitor substitutionModelMonitor, MinimiserMonitor rateMonitor) doubleGeneralLikelihoodSearcher.optimiseAllSimple(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor) doubleGeneralLikelihoodSearcher.optimiseAllSimple(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor, int groupOptimistionType) doubleGeneralLikelihoodSearcher.optimiseAllSimpleHeirarchy(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor) doubleGeneralLikelihoodSearcher.optimiseGeneral(StoppingCriteria stopper, int fracDigits, AlgorithmCallback callback, SearchMonitor monitor)