Uses of Class
pal.tree.SimulatedAlignment
Packages that use SimulatedAlignment
Package
Description
Classes for providing the data structure of
trees, for constructing and modifying trees, and for parameterizing
trees (e.g., clock constraint).
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Uses of SimulatedAlignment in pal.tree
Methods in pal.tree that return SimulatedAlignmentModifier and TypeMethodDescriptionfinal SimulatedAlignmentSimulatedAlignment.Factory.generateAlignment(Tree tree) Generate a simulated alignment based on input treefinal SimulatedAlignment[]SimulatedAlignment.Factory.generateAlignments(Tree[] trees, AlgorithmCallback callback) Generate an array of simulated alignments based on an array of input trees