Uses of Interface
pal.tree.ClusterTree.ClusteringMethod
Packages that use ClusterTree.ClusteringMethod
Package
Description
Classes for providing the data structure of
trees, for constructing and modifying trees, and for parameterizing
trees (e.g., clock constraint).
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Uses of ClusterTree.ClusteringMethod in pal.supgma
Methods in pal.supgma with parameters of type ClusterTree.ClusteringMethodModifier and TypeMethodDescriptionSUPGMABase.generateAlignmentBootstrappedSUPGMATree(AlgorithmCallback callback, ClusterTree.ClusteringMethod cm, SUPGMABase.PopulationParameters pp, int numberOfReplicates, LMSSolver solver) SUPGMABase.PopulationParameters.generateSUPGMATree(ClusterTree.ClusteringMethod cm) SUPGMABase.PopulationParameters.generateSUPGMATree(AlgorithmCallback callback, ClusterTree.ClusteringMethod cm, DistanceMatrixGenerator replicateSource, int numberOfAlignmentBootstrapReplicates, LMSSolver solver) SUPGMABase.solve(AlgorithmCallback callback, ClusterTree.ClusteringMethod cm, LMSSolver solver) Constructors in pal.supgma with parameters of type ClusterTree.ClusteringMethodModifierConstructorDescriptionSUPGMATree(DistanceMatrix m, TimeOrderCharacterData tocd, double rate, ClusterTree.ClusteringMethod cm) constructor SUPGMA treeSUPGMATree(DistanceMatrix m, TimeOrderCharacterData tocd, DeltaModel deltaModel, boolean allowNegatives, ClusterTree.ClusteringMethod cm) constructor SUPGMA tree -
Uses of ClusterTree.ClusteringMethod in pal.tree
Fields in pal.tree declared as ClusterTree.ClusteringMethodModifier and TypeFieldDescriptionstatic final ClusterTree.ClusteringMethodClusterTree.COMPLETE_LINKAGEstatic final ClusterTree.ClusteringMethodClusterTree.SINGLE_LINKAGEstatic final ClusterTree.ClusteringMethodClusterTree.UPGMAstatic final ClusterTree.ClusteringMethodClusterTree.WPGMAConstructors in pal.tree with parameters of type ClusterTree.ClusteringMethod