RateHandler

public interface RateHandler

Nested Class Summary

Nested Classes

Modifier and Type

Interface

Description

static final class

RateHandler.Utils
Method Summary

Modifier and Type

Method

Description

void

adjustDistances(double[][] matrix, TimeOrderCharacterData tocd)

void

fillInLSInfo(double[] mRow, int startingIndex, int minSample, int maxSample, double[] sampleTimes)

MutationRateModel.Factory

generateRateModelFactory(double[] deltas, TimeOrderCharacterData tocd)

String

getInfo()

int

getNumberOfParameters(TimeOrderCharacterData tocd)

boolean

isCICompatible()

Method Details
- getNumberOfParameters
  
  int getNumberOfParameters(TimeOrderCharacterData tocd)
- adjustDistances
  
  void adjustDistances(double[][] matrix, TimeOrderCharacterData tocd)
- isCICompatible
  
  boolean isCICompatible()
- getInfo
  
  String getInfo()
- fillInLSInfo
  
  void fillInLSInfo(double[] mRow, int startingIndex, int minSample, int maxSample, double[] sampleTimes)
- generateRateModelFactory
  
  MutationRateModel.Factory generateRateModelFactory(double[] deltas, TimeOrderCharacterData tocd)