Uses of Class
pal.substmodel.NucleotideModel

Packages that use NucleotideModel
Package
Description
pal.substmodel
Classes describing substitution models, i.e.

  • Uses of NucleotideModel in pal.substmodel

    Subclasses of NucleotideModel in pal.substmodel
    Modifier and Type
    Class
    Description
    class 
    F81
    Felsenstein 1981 model of nucleotide evolution
    class 
    F84
    Felsenstein 1984 (PHYLIP) model of nucleotide evolution
    class 
    GTR
    GTR (general time reversible) model of nucleotide evolution Lanave, C., G.
    class 
    HKY
    Hasegawa-Kishino-Yano model of nucleotide evolution Hasegawa, M., H.
    class 
    TN
    Tamura-Nei model of nucleotide evolution Tamura, K.
    Methods in pal.substmodel that return NucleotideModel
    Modifier and Type
    Method
    Description
    static NucleotideModel
    NucleotideModel.getInstance(int modelID, double[] params, double[] freq)
    Create nucleotide substitution model according to model type