Uses of Class pal.substmodel.CodonModel

Packages that use CodonModel

Package

Description

Classes describing substitution models, i.e.

Uses of CodonModel in pal.substmodel

Subclasses of CodonModel in pal.substmodel

Modifier and Type

Class

Description

class

YangCodonModel

Yang's model of codon evolution More advanced codon Substitution Models (of Neilson and Yang) are now included (the M1, and M2 models).

Methods in pal.substmodel that return CodonModel

Modifier and Type

Method

Description

static CodonModel

CodonModel.getInstance(int modelID, double[] params, double[] freq)

Create codon substitution model according to model type