Uses of Class
pal.substmodel.AminoAcidModel

Packages that use AminoAcidModel
Package
Description
pal.substmodel
Classes describing substitution models, i.e.

  • Uses of AminoAcidModel in pal.substmodel

    Subclasses of AminoAcidModel in pal.substmodel
    Modifier and Type
    Class
    Description
    class 
    BLOSUM62
    BLOSUM62 model of amino acid evolution
    class 
    CPREV
    CPREV model of amino acid evolution (J.Adachi et al.
    class 
    Dayhoff
    Dayhoff model for amino acid evolution Dayhoff, M.O., Schwartz, R.M., Orcutt, B.C.
    class 
    JTT
    JTT model of amino acid evolution Jones, D.
    class 
    MTREV24
    MTREV24 model of amino acid evolution
    class 
    VT
    VT (variable time matrix) model of amino acid evolution Modeling Amino Acid Replacement Mueller, T.
    class 
    WAG
    WAG model of amino acid evolution (S.
    Methods in pal.substmodel that return AminoAcidModel
    Modifier and Type
    Method
    Description
    static AminoAcidModel
    AminoAcidModel.getInstance(int modelID, double[] freq)
    Create amino acid model according to model type