Package pal.substmodel

Interface TransitionProbability

All Superinterfaces:
Cloneable, Serializable
public interface TransitionProbability extends Cloneable, Serializable
For objects that represent a source of transition probabilities TransitionProbability.java,v 1.3 2000/08/08 22:58:29 alexi Exp $
Author:
Matthew Goode

  • Method Summary

    Modifier and Type
    Method
    Description
    int
    getDimension()
     
    double
    getTransitionProbability(int startState, int endState)
    Returns the transition probability for changing from startState into endState
    void
    setDistance(double arc)
    compute transition probabilities for a expected distance using the prespecified rate matrix
    void
    setTime(double start, double end)
    compute transition probabilities for a expected time span using the prespecified rate matrix

  • Method Details

    • setDistance

      void setDistance(double arc)
      compute transition probabilities for a expected distance using the prespecified rate matrix
      Parameters:
      arc - expected distance

    • setTime

      void setTime(double start, double end)
      compute transition probabilities for a expected time span using the prespecified rate matrix
      Parameters:
      start - start time
      end - end time

    • getTransitionProbability

      double getTransitionProbability(int startState, int endState)
      Returns the transition probability for changing from startState into endState
      Parameters:
      startState - - the starting state
      endState - - the resulting state

    • getDimension

      int getDimension()