Package pal.statistics

Interface TopologyTestEngine.StatisticsHandler

All Known Implementing Classes:
ShimodairaHasegawaStatistics
Enclosing class:
TopologyTestEngine
public static interface TopologyTestEngine.StatisticsHandler

  • Method Summary

    Modifier and Type
    Method
    Description
    double[]
    getOriginalTestStatistics(double[] originalOptimisedLogLikelihoods, int numberOfTopologies)
     
    double[]
    getPValues(double[] originalOptimisedLogLikelihoods, double[][] replicateLogLikelihoods, int numberOfReplicates, int numberOfTopologies)
     

  • Method Details

    • getOriginalTestStatistics

      double[] getOriginalTestStatistics(double[] originalOptimisedLogLikelihoods, int numberOfTopologies)

    • getPValues

      double[] getPValues(double[] originalOptimisedLogLikelihoods, double[][] replicateLogLikelihoods, int numberOfReplicates, int numberOfTopologies)
      Parameters:
      originalOptimisedLogLikelihoods - stored as [topology]
      replicateLogLikelihoods - store as [replicate][topology]
      numberOfTopologies - the number of topologies
      numberOfTopologies - the number of replicates
      Returns: