Uses of Interface
pal.misc.Summarizable

Packages that use Summarizable
Package
Description
pal.coalescent
Classes to model population genetic processes using the coalescent.
pal.mep
Classes for the analysis of "measurably evolving populations" (mep).
pal.misc
Classes that don't fit elsewhere ;^)

  • Uses of Summarizable in pal.coalescent

    Classes in pal.coalescent that implement Summarizable
    Modifier and Type
    Class
    Description
    class 
    ConstantPopulation
    This class models coalescent intervals for a constant population (parameter: N0=present-day population size).
    class 
    ConstExpConst
    This class models a population that grows exponentially from an initial population size alpha N0 at time y to a size N0 at time x until the present-day.
    class 
    ConstExpGrowth
    This class models a population that grows exponentially from an inital population size alpha N0 to a present-day size N0.
    class 
    DemographicModel
    This abstract class contains methods that are of general use for modelling coalescent intervals given a demographic model.
    class 
    ExpandingPopulation
    This class models a population that grows exponentially from an inital population size alpha N0 to a present-day size N0.
    class 
    ExponentialGrowth
    This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).

  • Uses of Summarizable in pal.mep

    Classes in pal.mep that implement Summarizable
    Modifier and Type
    Class
    Description
    class 
    ConstantMutationRate
    This class models a constant mutation rate (parameter: mu = mutation rate).
    class 
    MutationRateModel
    This abstract class contains methods that are of general use for modelling mutation rate changes over time.
    class 
    SteppedMutationRate
    This class models a step-wise mutation rate.
    class 
    WindowedMutationRate
    This class models a windowed mutation rate (parameter: mu = mutation rate).

  • Uses of Summarizable in pal.misc

    Classes in pal.misc that implement Summarizable
    Modifier and Type
    Class
    Description
    class 
    SimpleSummarizable
     
    Constructors in pal.misc with parameters of type Summarizable
    Modifier
    Constructor
    Description
     
    SimpleSummarizable(Summarizable toImitate)
    The Imitation constructor - for immitating another Summarizable object with minimum memory requirements