DeltaModel.Utils

java.lang.Object

pal.mep.DeltaModel.Utils

Enclosing interface:: DeltaModel

public static final class DeltaModel.Utils extends Object

Constructor Summary

Constructors

Constructor

Description

Utils()
Method Summary

Modifier and Type

Method

Description

static final DeltaModel

getDisjointBased(DeltaModel primaryModel, DeltaModel subgroupModel, TimeOrderCharacterData subgroupTOCD)

static final DeltaModel

getMutationRateModelBased(MutationRateModel.Factory mepFactory)

For interfacing with time based mutation rate models

static final DeltaModel

getUntimedBased()

For serial sampled analysis when no time information is available.

static final DeltaModel

getUntimedBased(double[] initalDeltas)

For serial sampled analysis when no time information is available.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- Utils
  
  public Utils()
Method Details
- getMutationRateModelBased
  
  public static final DeltaModel getMutationRateModelBased(MutationRateModel.Factory mepFactory)
  
  For interfacing with time based mutation rate models
- getUntimedBased
  
  public static final DeltaModel getUntimedBased()
  
  For serial sampled analysis when no time information is available.
- getUntimedBased
  
  public static final DeltaModel getUntimedBased(double[] initalDeltas)
  
  For serial sampled analysis when no time information is available.
  
  Parameters:
  
  initialDeltas - , if not of required length (for given tocd) uses subset (or sets remainder to zero)
- getDisjointBased
  
  public static final DeltaModel getDisjointBased(DeltaModel primaryModel, DeltaModel subgroupModel, TimeOrderCharacterData subgroupTOCD)