Uses of Interface
pal.eval.UnconstrainedLikelihoodModel.Leaf
Packages that use UnconstrainedLikelihoodModel.Leaf
Package
Description
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
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Uses of UnconstrainedLikelihoodModel.Leaf in pal.eval
Classes in pal.eval that implement UnconstrainedLikelihoodModel.LeafMethods in pal.eval that return UnconstrainedLikelihoodModel.LeafModifier and TypeMethodDescriptionUnconstrainedLikelihoodModel.Instance.createNewLeaf(int[] patternStateMatchup, int numberOfPatterns) Create anew leaf calculatorSimpleUnconstrainedLikelihoodModel.LeafImpl.getCopy()UnconstrainedLikelihoodModel.Leaf.getCopy()Create a new Leaf calculator that has exactly the same properties as this one (but is different such that it may be used independently) -
Uses of UnconstrainedLikelihoodModel.Leaf in pal.treesearch
Methods in pal.treesearch that return UnconstrainedLikelihoodModel.LeafModifier and TypeMethodDescriptionConstraintModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns) FixedBSRDTGlobalClockModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns) FixedSRDTGlobalClockModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns) GlobalClockModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns) MRDTGlobalClockModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns) SRDTGlobalClockModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns) UnconstrainedModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns) protected final UnconstrainedLikelihoodModel.LeafAbstractLeafNode.createNewFreeLeafCalculator(GeneralConstructionTool tool) GeneralConstructionTool.createNewFreeLeafCalculator(int[] patternStateMatchup, int numberOfPatterns)