java.lang.Object

pal.eval.SingleSplitMolecularClockLikelihoodModel

All Implemented Interfaces:: MolecularClockLikelihoodModel

public class SingleSplitMolecularClockLikelihoodModel extends Object implements MolecularClockLikelihoodModel

Nested Class Summary

Nested classes/interfaces inherited from interface pal.eval.MolecularClockLikelihoodModel
MolecularClockLikelihoodModel.External, MolecularClockLikelihoodModel.HeightConverter, MolecularClockLikelihoodModel.Instance, MolecularClockLikelihoodModel.Internal, MolecularClockLikelihoodModel.Leaf, MolecularClockLikelihoodModel.Simulator
Constructor Summary

Constructors

Constructor

Description

SingleSplitMolecularClockLikelihoodModel()
Method Summary

Modifier and Type

Method

Description

static final MolecularClockLikelihoodModel.Instance

createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, double splitTime)

static final MolecularClockLikelihoodModel.Instance

createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, double[] classProbabilities, double splitTime)

static final MolecularClockLikelihoodModel.Instance

createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, double splitTime)

static final MolecularClockLikelihoodModel.Instance

createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, LHCalculator.Factory baseFactory, double splitTime)

static final void

main(String[] args)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- SingleSplitMolecularClockLikelihoodModel
  
  public SingleSplitMolecularClockLikelihoodModel()
Method Details
- createInstance
  
  public static final MolecularClockLikelihoodModel.Instance createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, LHCalculator.Factory baseFactory, double splitTime)
- createInstance
  
  public static final MolecularClockLikelihoodModel.Instance createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, double splitTime)
- createInstance
  
  public static final MolecularClockLikelihoodModel.Instance createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, double splitTime)
- createInstance
  
  public static final MolecularClockLikelihoodModel.Instance createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, double[] classProbabilities, double splitTime)
- main
  
  public static final void main(String[] args)

Class SingleSplitMolecularClockLikelihoodModel

Nested Class Summary

Nested classes/interfaces inherited from interface pal.eval.MolecularClockLikelihoodModel

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Details

SingleSplitMolecularClockLikelihoodModel

Method Details

createInstance

createInstance

createInstance

createInstance

main