pal.eval.SimpleUnconstrainedLikelihoodModel.LeafImpl

public static final class SimpleUnconstrainedLikelihoodModel.LeafImpl extends Object implements UnconstrainedLikelihoodModel.Leaf

Constructor Details
- LeafImpl
  
  public LeafImpl(LHCalculator.Leaf base, SubstitutionModel model)
Method Details
- getFlatConditionalProbabilities
  
  public ConditionalProbabilityStore getFlatConditionalProbabilities()
  
  Specified by:
  
  getFlatConditionalProbabilities in interface UnconstrainedLikelihoodModel.Leaf
- getExtendedConditionalProbabilities
  
  public ConditionalProbabilityStore getExtendedConditionalProbabilities(double distance)
  
  Specified by:
  
  getExtendedConditionalProbabilities in interface UnconstrainedLikelihoodModel.Leaf
- getCopy
  
  public UnconstrainedLikelihoodModel.Leaf getCopy()
  
  Description copied from interface: UnconstrainedLikelihoodModel.Leaf
  
  Create a new Leaf calculator that has exactly the same properties as this one (but is different such that it may be used independently)
  
  Specified by:
  
  getCopy in interface UnconstrainedLikelihoodModel.Leaf
  
  Returns:
  
  a copy of this leaf calculator

Class SimpleUnconstrainedLikelihoodModel.LeafImpl

Constructor Summary