Uses of Interface
pal.distance.DistanceMatrixAccess
Packages that use DistanceMatrixAccess
Package
Description
Classes for reading and generating distance matrices, including computation
of pairwise distances for sequence data (maximum-likelihood and observed
distances).
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Uses of DistanceMatrixAccess in pal.distance
Methods in pal.distance that return DistanceMatrixAccessModifier and TypeMethodDescriptionstatic DistanceMatrixAccessDistanceMatrixAccess.Utils.createEvolutionary(Alignment a, SubstitutionModel sm) static DistanceMatrixAccessDistanceMatrixAccess.Utils.createSimple(DistanceMatrix base) -
Uses of DistanceMatrixAccess in pal.supgma
Methods in pal.supgma with parameters of type DistanceMatrixAccessModifier and TypeMethodDescriptionSUPGMABase.process(DistanceMatrixAccess alternativeSource, AlgorithmCallback callback, LMSSolver solver) Constructors in pal.supgma with parameters of type DistanceMatrixAccessModifierConstructorDescriptionSUPGMABase(DistanceMatrixAccess distanceAccess, DistanceMatrixGenerator replicateGenerator, TimeOrderCharacterData tocd)