Package pal.datatype

Class NumericDataType

java.lang.Object
pal.datatype.SimpleDataType
pal.datatype.NumericDataType
All Implemented Interfaces:
Serializable, DataType
public class NumericDataType extends SimpleDataType
This datatype stores numeric values. These can be any 2 byte integer between 0-65536. This can be used for SSR alleles or indel sizes.
Version:
$Id:
Author:
Ed Buckler
See Also:

  • Field Details

    • DEFAULT_INSTANCE

      public static final DataType DEFAULT_INSTANCE

  • Constructor Details

    • NumericDataType

      public NumericDataType()

    • NumericDataType

      public NumericDataType(int numberOfStates)

  • Method Details

    • getNumStates

      public int getNumStates()
      Description copied from interface: DataType
      get number of unique states
      Returns:
      number of unique states

    • isUnknownStateImpl

      protected boolean isUnknownStateImpl(int state)
      Description copied from class: SimpleDataType
      For subclasses to handle, without regard for gaps
      Specified by:
      isUnknownStateImpl in class SimpleDataType
      Returns:
      true if this state is an unknown state

    • getStateImpl

      protected int getStateImpl(char c)
      get state corresponding to a character
      Specified by:
      getStateImpl in class SimpleDataType
      Parameters:
      c - character
      Returns:
      state

    • getCharImpl

      protected char getCharImpl(int state)
      Get character corresponding to a given state
      Specified by:
      getCharImpl in class SimpleDataType

    • getNumericCharFromNumericIndex

      public final char getNumericCharFromNumericIndex(int index)
      Returns a unique ascii character for any given numeric size

    • getNumericIndexFromNumericChar

      public final int getNumericIndexFromNumericChar(char c)
      Returns numeric index (size) from a unique ascii character

    • getDescription

      public String getDescription()
      String describing the data type
      Returns:
      string describing the data type

    • getTypeID

      public int getTypeID()
      Get numerical code describing the data type
      Returns:
      numerical code