Uses of Class
pal.alignment.SimpleAlignment
Packages that use SimpleAlignment
Package
Description
Classes dealing with sequence alignments, including methods for reading
and printing in several possible formats, as well as rearranging and
concatenating.
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Uses of SimpleAlignment in pal.alignment
Subclasses of SimpleAlignment in pal.alignmentModifier and TypeClassDescriptionclassMultiLocusAnnotatedAlignment is an extension of the SimpleAlignment that includes Annotation, and is designed for multiple loci.classThis is the basic implementation of the Annotation interface, which is designed to provide annotation for an alignment.