Uses of Interface
pal.algorithmics.UndoableAction
Packages that use UndoableAction
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Uses of UndoableAction in pal.algorithmics
Methods in pal.algorithmics that return UndoableActionModifier and TypeMethodDescriptionstatic final UndoableActionUndoableAction.Utils.getCombined(UndoableAction[] subActions) Create an action that combines multiple actionsstatic final UndoableActionUndoableAction.Utils.getDistributedSelection(UndoableAction[] subActions, double[] actionProportions) Create an action that selects uniformly from a number of sub actionsstatic final UndoableActionUndoableAction.Utils.getSimpleDesparation(UndoableAction primaryAction, UndoableAction desparateAction, double desparationLimit, int desparationInterval) A simple tool for change actions when things get desparatestatic final UndoableActionUndoableAction.Utils.getSimpleUniformSelection(UndoableAction[] subActions) Create an action that selects uniformly from a number of sub actionsMethods in pal.algorithmics with parameters of type UndoableActionModifier and TypeMethodDescriptionstatic final UndoableActionUndoableAction.Utils.getCombined(UndoableAction[] subActions) Create an action that combines multiple actionsstatic final UndoableActionUndoableAction.Utils.getDistributedSelection(UndoableAction[] subActions, double[] actionProportions) Create an action that selects uniformly from a number of sub actionsstatic final UndoableActionUndoableAction.Utils.getSimpleDesparation(UndoableAction primaryAction, UndoableAction desparateAction, double desparationLimit, int desparationInterval) A simple tool for change actions when things get desparatestatic final UndoableActionUndoableAction.Utils.getSimpleUniformSelection(UndoableAction[] subActions) Create an action that selects uniformly from a number of sub actionsConstructors in pal.algorithmics with parameters of type UndoableActionModifierConstructorDescriptionGeneralObjectState(UndoableAction action, StateProvider subject, boolean maximise) -
Uses of UndoableAction in pal.treesearch
Methods in pal.treesearch that return UndoableActionModifier and TypeMethodDescriptionUnrootedMLSearcher.getBranchLengthOptimiseAction(StoppingCriteria.Factory stopper) UnrootedMLSearcher.getBranchLengthWithModelOptimiseAction(StoppingCriteria.Factory stopper, MultivariateMinimum minimiser, int fxFracDigits, int xFracDigits) UnrootedMLSearcher.getFullSweepSPRAction(StoppingCriteria.Factory stopper) UnrootedMLSearcher.getModelOptimiseAction(MultivariateMinimum minimiser, int fxFracDigits, int xFracDigits) UnrootedMLSearcher.getModelOptimiseAction(MultivariateMinimum minimiser, MinimiserMonitor monitor, int fxFracDigits, int xFracDigits) UnrootedMLSearcher.getNNIAction(StoppingCriteria.Factory stopper) UnrootedMLSearcher.getNNIBranchLengthOptimiseAction(StoppingCriteria.Factory stopper) UnrootedMLSearcher.getSPRAction(StoppingCriteria.Factory stopper) UnrootedMLSearcher.getSweepSPRAction(StoppingCriteria.Factory stopper)