Uses of Interface
pal.algorithmics.StoppingCriteria
Packages that use StoppingCriteria
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Uses of StoppingCriteria in pal.algorithmics
Methods in pal.algorithmics that return StoppingCriteria -
Uses of StoppingCriteria in pal.treesearch
Methods in pal.treesearch with parameters of type StoppingCriteriaModifier and TypeMethodDescriptiondoubleGeneralLikelihoodSearcher.optimiseAllFullHeirarchy(StoppingCriteria mainStopper, StoppingCriteria subStopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor) doubleGeneralLikelihoodSearcher.optimiseAllPlusSubstitutionModel(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, MultivariateMinimum substitutionModelMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, int substitutionModelOptimiseFrequency, MinimiserMonitor substitutionModelMonitor, MinimiserMonitor rateMonitor) doubleGeneralLikelihoodSearcher.optimiseAllSimple(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback) doubleGeneralLikelihoodSearcher.optimiseAllSimple(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor) doubleGeneralLikelihoodSearcher.optimiseAllSimple(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor, int groupOptimistionType) doubleGeneralLikelihoodSearcher.optimiseAllSimpleHeirarchy(StoppingCriteria stopper, MultivariateMinimum rateMinimiser, int fxFracDigits, int xFracDigits, AlgorithmCallback callback, SearchMonitor monitor, MinimiserMonitor rateMonitor) doubleGeneralLikelihoodSearcher.optimiseGeneral(StoppingCriteria stopper, int fracDigits, AlgorithmCallback callback) doubleGeneralLikelihoodSearcher.optimiseGeneral(StoppingCriteria stopper, int fracDigits, AlgorithmCallback callback, SearchMonitor monitor) doubleUnrootedMLSearcher.simpleOptimiseLikelihood(StoppingCriteria stopper, AlgorithmCallback callback) Optimise the branch lengths of the tree to obtain the maximum likelihood.