Classes
class	MorganArguments
	Class for holding Morgan fingerprint specific arguments. More...

class	MorganAtomEnv
	Class for holding the bit-id created from Morgan fingerprint environments and the additional data necessary extra outputs. More...

class	MorganAtomInvGenerator
	Default atom invariants generator for Morgan fingerprint, generates ECFP-type invariants. More...

class	MorganBondInvGenerator
	Bond invariants generator for Morgan fingerprint. More...

class	MorganEnvGenerator
	Class that generates atom environments for Morgan fingerprint. More...

class	MorganFeatureAtomInvGenerator
	Alternative atom invariants generator for Morgan fingerprint, generate FCFP-type invariants. More...

Functions
template<typename OutputType >
RDKIT_FINGERPRINTS_EXPORT FingerprintGenerator< OutputType > *	getMorganGenerator (const unsigned int radius, const bool countSimulation=false, const bool includeChirality=false, const bool useBondTypes=true, const bool onlyNonzeroInvariants=false, AtomInvariantsGenerator atomInvariantsGenerator=nullptr, BondInvariantsGenerator bondInvariantsGenerator=nullptr, const std::uint32_t fpSize=2048, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const bool ownsAtomInvGen=false, const bool ownsBondInvGen=false)
	Get a fingerprint generator for Morgan fingerprint. More...

Function Documentation

◆ getMorganGenerator()

template<typename OutputType >

RDKIT_FINGERPRINTS_EXPORT FingerprintGenerator< OutputType > * RDKit::MorganFingerprint::getMorganGenerator	(	const unsigned int	radius,
		const bool	countSimulation = `false`,
		const bool	includeChirality = `false`,
		const bool	useBondTypes = `true`,
		const bool	onlyNonzeroInvariants = `false`,
		AtomInvariantsGenerator *	atomInvariantsGenerator = `nullptr`,
		BondInvariantsGenerator *	bondInvariantsGenerator = `nullptr`,
		const std::uint32_t	fpSize = `2048`,
		const std::vector< std::uint32_t >	countBounds = `{1, 2, 4, 8}`,
		const bool	ownsAtomInvGen = `false`,
		const bool	ownsBondInvGen = `false`
	)

Get a fingerprint generator for Morgan fingerprint.

Template Parameters

OutputType determines the size of the bitIds and the result, can be 32 or 64 bit unsigned integer

Parameters

radius	the number of iterations to grow the fingerprint
countSimulation	if set, use count simulation while generating the fingerprint
includeChirality	if set, chirality information will be added to the generated bit id, independently from bond invariants
onlyNonzeroInvariants	if set, bits will only be set from atoms that have a nonzero invariant
countBounds	boundaries for count simulation, corresponding bit will be set if the count is higher than the number provided for that spot
fpSize	size of the generated fingerprint, does not affect the sparse versions
countSimulation	if set, use count simulation while generating the fingerprint
includeChirality	sets includeChirality flag for both MorganArguments and the default bond generator MorganBondInvGenerator
useBondTypes	if set, bond types will be included as a part of the default bond invariants
onlyNonzeroInvariants	if set, bits will only be set from atoms that have a nonzero invariant
atomInvariantsGenerator	custom atom invariants generator to use
bondInvariantsGenerator	custom bond invariants generator to use
ownsAtomInvGen	if set atom invariants generator is destroyed with the fingerprint generator
ownsBondInvGen	if set bond invariants generator is destroyed with the fingerprint generator

Returns: FingerprintGenerator<OutputType>* that generates Morgan fingerprints

This generator supports the following AdditionalOutput types: