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RDKit
Open-source cheminformatics and machine learning.
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The bond-stretch term for the Universal Force Field. More...
#include <BondStretch.h>
Public Member Functions | |
| BondStretchContrib () | |
| BondStretchContrib (ForceField *owner, unsigned int idx1, unsigned int idx2, double bondOrder, const AtomicParams *end1Params, const AtomicParams *end2Params) | |
| Constructor. More... | |
| double | getEnergy (double *pos) const override |
| returns our contribution to the energy of a position More... | |
| void | getGrad (double *pos, double *grad) const override |
| calculates our contribution to the gradients of a position More... | |
| BondStretchContrib * | copy () const override |
| return a copy More... | |
Public Member Functions inherited from ForceFields::ForceFieldContrib | |
| ForceFieldContrib () | |
| ForceFieldContrib (ForceFields::ForceField *owner) | |
| virtual | ~ForceFieldContrib () |
| virtual double | getEnergy (double *pos) const =0 |
| returns our contribution to the energy of a position More... | |
| virtual void | getGrad (double *pos, double *grad) const =0 |
| calculates our contribution to the gradients of a position More... | |
| virtual ForceFieldContrib * | copy () const =0 |
| return a copy More... | |
Additional Inherited Members | |
Protected Attributes inherited from ForceFields::ForceFieldContrib | |
| ForceField * | dp_forceField {nullptr} |
| our owning ForceField More... | |
The bond-stretch term for the Universal Force Field.
Definition at line 20 of file UFF/BondStretch.h.
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inline |
Definition at line 22 of file UFF/BondStretch.h.
| ForceFields::UFF::BondStretchContrib::BondStretchContrib | ( | ForceField * | owner, |
| unsigned int | idx1, | ||
| unsigned int | idx2, | ||
| double | bondOrder, | ||
| const AtomicParams * | end1Params, | ||
| const AtomicParams * | end2Params | ||
| ) |
Constructor.
| owner | pointer to the owning ForceField |
| idx1 | index of end1 in the ForceField's positions |
| idx2 | index of end2 in the ForceField's positions |
| bondOrder | order of the bond (as a double) |
| end1Params | pointer to the parameters for end1 |
| end2Params | pointer to the parameters for end2 |
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inlineoverridevirtual |
return a copy
Implements ForceFields::ForceFieldContrib.
Definition at line 41 of file UFF/BondStretch.h.
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overridevirtual |
returns our contribution to the energy of a position
Implements ForceFields::ForceFieldContrib.
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overridevirtual |
calculates our contribution to the gradients of a position
Implements ForceFields::ForceFieldContrib.