Uses of Class
org.openmolecules.chem.conf.gen.RigidFragment
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Packages that use RigidFragment Package Description org.openmolecules.chem.conf.gen -
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Uses of RigidFragment in org.openmolecules.chem.conf.gen
Fields in org.openmolecules.chem.conf.gen declared as RigidFragment Modifier and Type Field Description protected RigidFragment[]TorsionSetStrategy. mRigidFragmentMethods in org.openmolecules.chem.conf.gen that return RigidFragment Modifier and Type Method Description RigidFragmentRigidFragmentProvider. createFragment(StereoMolecule mol, int[] fragmentNo, int fragmentIndex)RigidFragmentRotatableBond. getFragment(int i)Constructors in org.openmolecules.chem.conf.gen with parameters of type RigidFragment Constructor Description RotatableBond(StereoMolecule mol, int bond, int[] fragmentNo, int[] disconnectedFragmentNo, int disconnectedFragmentSize, RigidFragment[] fragment, java.util.Random random)RotatableBond(StereoMolecule mol, int bond, int[] fragmentNo, int[] disconnectedFragmentNo, int disconnectedFragmentSize, RigidFragment[] fragment, java.util.Random random, boolean use60degreeSteps)TorsionSetStrategy(RotatableBond[] rotatableBond, RigidFragment[] fragment)TorsionSetStrategyAdaptiveRandom(RotatableBond[] rotatableBond, RigidFragment[] fragment, boolean preferLikelyTorsions, boolean startWithMostProbable, long seed)This torsion set strategy produces random sets of torsion indices until a torsion set collides.TorsionSetStrategyLikelySystematic(RotatableBond[] rotatableBond, RigidFragment[] fragment)TorsionSetStrategyRandom(RotatableBond[] rotatableBond, RigidFragment[] fragment, boolean preferLikelyTorsions, long seed)This simple TorsionSetStrategy produces random sets of torsion indexes in a loop.
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