Constant Field Values

Contents

• com.actelion.*
• org.machinelearning.*
• org.openmolecules.*
• org.slf4j.*
• smile.clustering.*
• smile.data.*
• smile.math.*

com.actelion.*

com.actelion.research.calc.CorrelationCalculator

Modifier and Type	Constant Field	Value
public static final int	TYPE_BRAVAIS_PEARSON	0
public static final int	TYPE_NONE	-1
public static final int	TYPE_SPEARMAN	1

com.actelion.research.calc.Matrix

Modifier and Type	Constant Field	Value
public static final double	TINY	1.0E-11
public static final double	TINY04	1.0E-4
public static final double	TINY08	1.0E-8

com.actelion.research.calc.SelfOrganizedMap

Modifier and Type	Constant Field	Value
public static final int	cModeFastBestMatchFinding	32
public static final int	cModeGrowDuringOptimization	16
public static final int	cModeNeighbourhoodGaussean	0
public static final int	cModeNeighbourhoodLinear	2
public static final int	cModeNeighbourhoodMexicanHat	1
public static final int	cModeTopologyUnlimited	8

com.actelion.research.calc.classification.PrecisionAndRecall

Modifier and Type	Constant Field	Value
public static final java.lang.String	ATTR_FN	"FN"
public static final java.lang.String	ATTR_FP	"FP"
public static final java.lang.String	ATTR_TN	"TN"
public static final java.lang.String	ATTR_TP	"TP"

com.actelion.research.calc.histogram.ConstantsHistogram

Modifier and Type	Constant Field	Value
public static final double	TINY_FACTOR	0.01

com.actelion.research.calc.regression.ConstantsRegressionMethods

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_MODEL	3
public static final java.lang.String	MODEL_GAUSSIAN_PROCESS	"Gaussian process regression"
public static final java.lang.String	MODEL_KNN	"KNN regression"
public static final java.lang.String	MODEL_MEDIAN	"Median"
public static final java.lang.String	MODEL_NEURAL_NETWORK	"Neural network regression"
public static final java.lang.String	MODEL_PLS	"PLS"
public static final java.lang.String	MODEL_PLS_POWER	"PLS Power"
public static final java.lang.String	MODEL_RND_FOREST	"Random Forest regression"
public static final java.lang.String	MODEL_SVM	"SVM regression"
public static final java.lang.String	RESULT_EVALUATOR_BALANCED_R2_TRAIN_TEST	"BalancedR2TrainTest"
public static final java.lang.String	RESULT_EVALUATOR_MAXIMUM_R2_TEST	"MaximumR2Test"

com.actelion.research.calc.regression.ParameterRegressionMethod

Modifier and Type	Constant Field	Value
public static final java.lang.String	TAG_NAME	"Name"
public static final java.lang.String	TAG_STRING	"ParameterToString"

com.actelion.research.calc.regression.gaussianprocess.ParameterGaussianProcess

Modifier and Type	Constant Field	Value
public static final double	LAMBDA	0.005
public static final java.lang.String	TAG_LAMBDA	"Lambda"

com.actelion.research.calc.regression.knn.KNNRegression

Modifier and Type	Constant Field	Value
public static final int	NEIGHBOURS	3

com.actelion.research.calc.regression.knn.ParameterKNN

Modifier and Type	Constant Field	Value
public static final java.lang.String	TAG_NEIGHBOURS	"Neighbours"

com.actelion.research.calc.regression.linear.pls.ParameterPLS

Modifier and Type	Constant Field	Value
public static final boolean	CENTER_DATA	true
public static final int	FACTORS	3
public static final java.lang.String	TAG_FACTORS	"Factors"

com.actelion.research.calc.regression.linear.pls.PLSRegressionModelCalculator

Modifier and Type	Constant Field	Value
public static final int	FACTORS	15

com.actelion.research.calc.regression.linear.pls.boxcox.ParameterPLSBoxCox

Modifier and Type	Constant Field	Value
public static final double	LAMBDA	0.4
public static final java.lang.String	TAG_LAMBDA	"Lambda"

com.actelion.research.calc.regression.linear.pls.boxcox.PLSBoxCoxY

Modifier and Type	Constant Field	Value
public static final int	FACTORS	15
public static final double	LAMBDA	0.6

com.actelion.research.calc.regression.neuralnetwork.NeuralNetworkParameterHelper

Modifier and Type	Constant Field	Value
public static final java.lang.String	ACTIVATION_FCT_LOG	"LogisticSigmoid"
public static final java.lang.String	ACTIVATION_FCT_TAN	"Tangens"

com.actelion.research.calc.regression.neuralnetwork.ParameterNeuralNetwork

Modifier and Type	Constant Field	Value
public static final java.lang.String	TAG_ACTIVATION_FCT	"ActivationFunction"
public static final java.lang.String	TAG_INNERLAYER_ARCITECTURE	"InnerLayerArchitecture"

com.actelion.research.calc.regression.randomforest.ParameterRandomForest

Modifier and Type	Constant Field	Value
public static final int	MAX_NODES	50
public static final double	MTRY	0.333
public static final int	NODE_SIZE	5
public static final int	NUM_TREES	100
public static final java.lang.String	TAG_MAX_NODES	"MaxNodes"
public static final java.lang.String	TAG_MTRY	"MTry"
public static final java.lang.String	TAG_NODE_SIZE	"NodeSize"
public static final java.lang.String	TAG_TREES	"NumTrees"

com.actelion.research.calc.regression.randomforest.RandomForestRegression

Modifier and Type	Constant Field	Value
public static final int	MIN_NUM_VAR_SPLIT	3

com.actelion.research.calc.regression.svm.ParameterSVM

Modifier and Type	Constant Field	Value
public static final java.lang.String	TAG_C	"C"
public static final java.lang.String	TAG_CACHE_SIZE	"CacheSize"
public static final java.lang.String	TAG_COEF0	"Coef0"
public static final java.lang.String	TAG_DEGREE	"Degree"
public static final java.lang.String	TAG_EPSILON	"Epsilon"
public static final java.lang.String	TAG_GAMMA	"Gamma"
public static final java.lang.String	TAG_KERNEL	"Kernel"
public static final java.lang.String	TAG_NR_WEIGHT	"nrWeight"
public static final java.lang.String	TAG_NU	"Nu"
public static final java.lang.String	TAG_P	"p"
public static final java.lang.String	TAG_PROBABILITY	"Probability"
public static final java.lang.String	TAG_SHRINKING	"Shrinking"
public static final java.lang.String	TAG_SVM_TYPE	"SVMRegressionType"

com.actelion.research.calc.regression.svm.svm

Modifier and Type	Constant Field	Value
public static final int	LIBSVM_VERSION	323

com.actelion.research.calc.regression.svm.SVMParameterHelper

Modifier and Type	Constant Field	Value
public static final int	DEGREE_ANALYTICALLY_PARAMETER_CALC	-1
public static final java.lang.String	KERNEL_TYPE_LINEAR	"Linear"
public static final java.lang.String	KERNEL_TYPE_POLY	"Poly"
public static final java.lang.String	KERNEL_TYPE_PRECOMPUTED	"Precomputed"
public static final java.lang.String	KERNEL_TYPE_RBF	"RBF"
public static final java.lang.String	KERNEL_TYPE_SIGMOID	"Sigmoid"
public static final java.lang.String	SVM_TYPE_C	"C_SVC"
public static final java.lang.String	SVM_TYPE_EPSILON_SVR	"EpsSVR"
public static final java.lang.String	SVM_TYPE_NU	"NU_SVC"
public static final java.lang.String	SVM_TYPE_NU_SVR	"NU_SVR"
public static final java.lang.String	SVM_TYPE_ONE_CLASS	"OneClass"

com.actelion.research.calc.regression.svm.SVMRegression

Modifier and Type	Constant Field	Value
public static final int	LIMIT_ROWS_ANALYTICAL	1000
public static final double	NU	0.1

com.actelion.research.calc.statistics.StatisticsOverview

Modifier and Type	Constant Field	Value
public static final java.lang.String	TAG_MEAN	"Avr"
public static final java.lang.String	TAG_MEDIAN	"Median"
public static final java.lang.String	TAG_PERCENTILE05	"Percentile.05"
public static final java.lang.String	TAG_PERCENTILE95	"Percentile.95"
public static final java.lang.String	TAG_SDV	"SDV"

com.actelion.research.chem.AbstractDepictor

Modifier and Type	Constant Field	Value
public static final int	cColorGray	1
public static final int	cDModeAtomNo	2
public static final int	cDModeBondNo	4
public static final int	cDModeHiliteAllQueryFeatures	8
public static final int	cDModeNoColorOnESRAndCIP	8192
public static final int	cDModeNoImplicitAtomLabelColors	2048
public static final int	cDModeNoStereoProblem	4096
public static final int	cDModeNoTabus	1
public static final int	cDModeShowMapping	16
public static final int	cDModeShowSymmetryDiastereotopic	512
public static final int	cDModeShowSymmetryEnantiotopic	1024
public static final int	cDModeShowSymmetrySimple	256
public static final int	cDModeSuppressChiralText	32
public static final int	cDModeSuppressCIPParity	64
public static final int	cDModeSuppressESR	128
public static final int	cModeChiralTextAboveMolecule	262144
public static final int	cModeChiralTextBelowMolecule	0
public static final int	cModeChiralTextOnFrameBottom	786432
public static final int	cModeChiralTextOnFrameTop	524288
protected static final int	cModeInflateToAVBL	196608
public static final int	cModeInflateToHighResAVBL	131072
public static final int	cModeInflateToMaxAVBL	65536
protected static final int	cModeMaxBondLength	65535
public static final int	cOptAvBondLen	24

com.actelion.research.chem.AbstractDrawingObject

Modifier and Type	Constant Field	Value
protected static final java.lang.String	DESCRIPTOR_END	"></DrawingObject>"
protected static final java.lang.String	DESCRIPTOR_START	"<DrawingObject"
protected static final java.lang.String	DESCRIPTOR_TYPE	" type=\""

com.actelion.research.chem.AtomTypeCalculator

Modifier and Type	Constant Field	Value
public static final int	cPropertiesAll	32702
public static final int	cPropertiesAtomAllylic	8
public static final int	cPropertiesAtomAromatic	4
public static final int	cPropertiesAtomCharged	4096
public static final int	cPropertiesAtomRingCount	8192
public static final int	cPropertiesAtomRingSize	2
public static final int	cPropertiesAtomSmallRing	1
public static final int	cPropertiesAtomStabilized	16
public static final int	cPropertiesBasicType	60
public static final int	cPropertiesConnAtomAromatic	2048
public static final int	cPropertiesConnAtomNeighbours	256
public static final int	cPropertiesConnAtomNeighboursExact	512
public static final int	cPropertiesConnAtomSmallRing	1024
public static final int	cPropertiesConnAtomStabilized	16384
public static final int	cPropertiesConnAtomType	128
public static final int	cPropertiesConnAtomTypeSimple	64
public static final int	cPropertiesConnBondOrder	32
public static final int	cPropertiesForCLogP	2145
public static final int	cPropertiesForCLogPCharges	6241
public static final int	cPropertiesForMutator	32190
public static final int	cPropertiesForSolubility	2144

com.actelion.research.chem.Canonizer

Modifier and Type	Constant Field	Value
public static final int	ASSIGN_PARITIES_TO_TETRAHEDRAL_N	32
public static final int	cIDCodeCurrentVersion	9
protected static final int	cIDCodeVersion2	8
protected static final int	cIDCodeVersion3	9
public static final int	CONSIDER_DIASTEREOTOPICITY	2
public static final int	CONSIDER_ENANTIOTOPICITY	4
public static final int	CONSIDER_STEREOHETEROTOPICITY	6
public static final int	COORDS_ARE_3D	64
protected static final int	cParity1And	4
protected static final int	cParity1Or	6
protected static final int	cParity2And	5
protected static final int	cParity2Or	7
public static final int	CREATE_PSEUDO_STEREO_GROUPS	128
public static final int	CREATE_SYMMETRY_RANK	1
public static final int	DISTINGUISH_RACEMIC_OR_GROUPS	256
public static final int	ENCODE_ATOM_CUSTOM_LABELS	8
public static final int	ENCODE_ATOM_SELECTION	16
public static final int	TIE_BREAK_FREE_VALENCE_ATOMS	512

com.actelion.research.chem.ChemistryHelper

Modifier and Type	Constant Field	Value
public static final int	REACTION_TYPE_NOMOLS	0
public static final int	REACTION_TYPE_NOPRODUCTS	1
public static final int	REACTION_TYPE_NORMAL	3
public static final int	REACTION_TYPE_REACTANTS	2

com.actelion.research.chem.ExtendedDepictor

Modifier and Type	Constant Field	Value
public static final int	TYPE_MARKUSH	2
public static final int	TYPE_MOLECULES	0
public static final int	TYPE_REACTION	1

com.actelion.research.chem.ExtendedMolecule

Modifier and Type	Constant Field	Value
public static final int	cMaxConnAtoms	16
public static final float	FISCHER_PROJECTION_LIMIT	0.0872664675116539f
public static final float	STEREO_ANGLE_LIMIT	0.0872664675116539f

com.actelion.research.chem.ExtendedMoleculeFunctions

Modifier and Type	Constant Field	Value
public static final int	COLOR_FOR_CENTER_SELECTION	128
public static final int	NUMBER_ELEMENTS	118

com.actelion.research.chem.Molecule

Modifier and Type	Constant Field	Value
public static final int	cAtomCIPParityNone	0
public static final int	cAtomCIPParityProblem	3
public static final int	cAtomCIPParityRorM	1
public static final int	cAtomCIPParitySorP	2
public static final int	cAtomColorBlue	64
public static final int	cAtomColorDarkGreen	384
public static final int	cAtomColorDarkRed	448
public static final int	cAtomColorGreen	192
public static final int	cAtomColorMagenta	256
public static final int	cAtomColorNone	0
public static final int	cAtomColorOrange	320
public static final int	cAtomColorRed	128
protected static final int	cAtomFlagAllylic	8192
protected static final int	cAtomFlagAromatic	4096
protected static final int	cAtomFlagConfigurationUnknown	67108864
protected static final int	cAtomFlagMarked	262144
protected static final int	cAtomFlags2RingBonds	1024
protected static final int	cAtomFlags3RingBonds	2048
protected static final int	cAtomFlags4RingBonds	3072
protected static final int	cAtomFlagsESR	66584576
protected static final int	cAtomFlagsHelper	261135
protected static final int	cAtomFlagsHelper2	31752
protected static final int	cAtomFlagsHelper3	134447111
protected static final int	cAtomFlagSmallRing	8
protected static final int	cAtomFlagsParity	3
protected static final int	cAtomFlagsRingBonds	3072
protected static final int	cAtomFlagStabilized	16384
protected static final int	cAtomFlagStereoProblem	131072
protected static final int	cAtomFlagsValence	-268435456
public static final int	cAtomParity1	1
public static final int	cAtomParity2	2
public static final int	cAtomParityIsPseudo	4
public static final int	cAtomParityNone	0
public static final int	cAtomParityUnknown	3
public static final int	cAtomQFAny	1
public static final int	cAtomQFAromatic	2
public static final int	cAtomQFAromState	6
public static final int	cAtomQFAromStateBits	2
public static final int	cAtomQFAromStateShift	1
public static final int	cAtomQFCharge	234881024
public static final int	cAtomQFChargeBits	3
public static final int	cAtomQFChargeShift	25
public static final int	cAtomQFExcludeGroup	536870912
public static final int	cAtomQFFlatNitrogen	268435456
public static final int	cAtomQFHydrogen	1920
public static final int	cAtomQFHydrogenBits	4
public static final int	cAtomQFHydrogenShift	7
public static final int	cAtomQFMatchStereo	8192
public static final int	cAtomQFMoreNeighbours	4096
public static final int	cAtomQFNarrowing	239060990
public static final int	cAtomQFNeighbourBits	5
public static final int	cAtomQFNeighbours	4063232
public static final int	cAtomQFNeighbourShift	17
public static final int	cAtomQFNoMoreNeighbours	2048
public static final int	cAtomQFNoOfBits	30
public static final int	cAtomQFNot0Hydrogen	128
public static final int	cAtomQFNot0Neighbours	131072
public static final int	cAtomQFNot0PiElectrons	16384
public static final int	cAtomQFNot1Hydrogen	256
public static final int	cAtomQFNot1Neighbour	262144
public static final int	cAtomQFNot1PiElectron	32768
public static final int	cAtomQFNot2Hydrogen	512
public static final int	cAtomQFNot2Neighbours	524288
public static final int	cAtomQFNot2PiElectrons	65536
public static final int	cAtomQFNot2RingBonds	16
public static final int	cAtomQFNot3Hydrogen	1024
public static final int	cAtomQFNot3Neighbours	1048576
public static final int	cAtomQFNot3RingBonds	32
public static final int	cAtomQFNot4Neighbours	2097152
public static final int	cAtomQFNot4RingBonds	64
public static final int	cAtomQFNotAromatic	4
public static final int	cAtomQFNotChain	8
public static final int	cAtomQFNotCharge0	67108864
public static final int	cAtomQFNotChargeNeg	33554432
public static final int	cAtomQFNotChargePos	134217728
public static final int	cAtomQFPiElectronBits	3
public static final int	cAtomQFPiElectrons	114688
public static final int	cAtomQFPiElectronShift	14
public static final int	cAtomQFRingSize	29360128
public static final int	cAtomQFRingSizeBits	3
public static final int	cAtomQFRingSizeShift	22
public static final int	cAtomQFRingState	120
public static final int	cAtomQFRingStateBits	4
public static final int	cAtomQFRingStateShift	3
public static final int	cAtomQFRxnParityBits	2
public static final int	cAtomQFRxnParityHint	-1073741824
public static final int	cAtomQFRxnParityInvert	-2147483648
public static final int	cAtomQFRxnParityRacemize	-1073741824
public static final int	cAtomQFRxnParityRetain	1073741824
public static final int	cAtomQFRxnParityShift	30
public static final int	cAtomQFSimpleFeatures	239060990
public static final int	cAtomRadicalState	48
public static final int	cAtomRadicalStateD	32
public static final int	cAtomRadicalStateNone	0
public static final int	cAtomRadicalStateS	16
public static final int	cAtomRadicalStateShift	4
public static final int	cAtomRadicalStateT	48
public static final int	cBondCIPParityEorP	1
public static final int	cBondCIPParityNone	0
public static final int	cBondCIPParityProblem	3
public static final int	cBondCIPParityZorM	2
protected static final int	cBondFlagAromatic	256
protected static final int	cBondFlagDelocalized	512
protected static final int	cBondFlagRing	64
protected static final int	cBondFlagsCIPParityShift	4
protected static final int	cBondFlagsESR	130048
protected static final int	cBondFlagsHelper2	960
protected static final int	cBondFlagsHelper3	63
protected static final int	cBondFlagSmallRing	128
protected static final int	cBondFlagsParity	3
public static final int	cBondParityEor1	1
public static final int	cBondParityNone	0
public static final int	cBondParityUnknown	3
public static final int	cBondParityZor2	2
public static final int	cBondQFAllFeatures	2097151
public static final int	cBondQFAromatic	524288
public static final int	cBondQFAromState	1572864
public static final int	cBondQFAromStateBits	2
public static final int	cBondQFAromStateShift	19
public static final int	cBondQFBondTypes	31
public static final int	cBondQFBondTypesBits	5
public static final int	cBondQFBondTypesShift	0
public static final int	cBondQFBridge	32640
public static final int	cBondQFBridgeBits	8
public static final int	cBondQFBridgeMin	1920
public static final int	cBondQFBridgeMinBits	4
public static final int	cBondQFBridgeMinShift	7
public static final int	cBondQFBridgeShift	7
public static final int	cBondQFBridgeSpan	30720
public static final int	cBondQFBridgeSpanBits	4
public static final int	cBondQFBridgeSpanShift	11
public static final int	cBondQFDelocalized	8
public static final int	cBondQFDouble	2
public static final int	cBondQFMatchStereo	262144
public static final int	cBondQFMetalLigand	16
public static final int	cBondQFNarrowing	1572960
public static final int	cBondQFNoOfBits	21
public static final int	cBondQFNotAromatic	1048576
public static final int	cBondQFNotRing	32
public static final int	cBondQFRing	64
public static final int	cBondQFRingSize	229376
public static final int	cBondQFRingSizeBits	3
public static final int	cBondQFRingSizeShift	15
public static final int	cBondQFRingState	96
public static final int	cBondQFRingStateBits	2
public static final int	cBondQFRingStateShift	5
public static final int	cBondQFSimpleFeatures	1572991
public static final int	cBondQFSingle	1
public static final int	cBondQFTriple	4
public static final int	cBondTypeCross	26
public static final int	cBondTypeDeleted	128
public static final int	cBondTypeDelocalized	64
public static final int	cBondTypeDouble	2
public static final int	cBondTypeDown	9
public static final int	cBondTypeIncreaseOrder	127
protected static final int	cBondTypeMaskSimple	103
protected static final int	cBondTypeMaskStereo	24
public static final int	cBondTypeMetalLigand	32
public static final int	cBondTypeSingle	1
public static final int	cBondTypeTriple	4
public static final int	cBondTypeUp	17
public static final int	cChiralityDiastereomers	458752
public static final int	cChiralityEpimers	393216
public static final int	cChiralityIsomerCountMask	65535
public static final int	cChiralityKnownEnantiomer	262144
public static final int	cChiralityMeso	131072
public static final int	cChiralityNotChiral	65536
public static final int	cChiralityRacemic	196608
public static final int	cChiralityUnknown	0
public static final int	cChiralityUnknownEnantiomer	327680
public static final int	cDefaultAtomValence	6
public static final int	cESRGroupBits	5
public static final int	cESRMaxGroups	32
public static final int	cESRTypeAbs	0
public static final int	cESRTypeAnd	1
public static final int	cESRTypeOr	2
public static final int	cHelperBitCIP	16
public static final int	cHelperBitIncludeNitrogenParities	256
public static final int	cHelperBitNeighbours	1
public static final int	cHelperBitParities	8
public static final int	cHelperBitRings	4
public static final int	cHelperBitRingsSimple	2
public static final int	cHelperBitsStereo	504
public static final int	cHelperBitSymmetryDiastereotopic	64
public static final int	cHelperBitSymmetryEnantiotopic	128
public static final int	cHelperBitSymmetrySimple	32
public static final int	cHelperCIP	31
public static final int	cHelperNeighbours	1
public static final int	cHelperNone	0
public static final int	cHelperParities	15
public static final int	cHelperRings	7
public static final int	cHelperRingsSimple	3
public static final int	cHelperSymmetryDiastereotopic	95
public static final int	cHelperSymmetryEnantiotopic	159
public static final int	cHelperSymmetrySimple	63
public static final int	cMaxAtomicNo	190
public static final int	cMoleculeColorDefault	0
public static final int	cMoleculeColorNeutral	1

com.actelion.research.chem.Molecule3D

Modifier and Type	Constant Field	Value
public static final int	ATTACHED_HYDROGEN_COUNT	960
public static final int	ATTACHED_HYDROGEN_COUNT_SHIFT	6
public static final int	BACKBONE	4
public static final int	FLAG1	8
public static final int	IMPORTANT	16
public static final int	INFO_AMINO	4
public static final int	INFO_ATOMNAME	3
public static final int	INFO_ATOMSEQUENCE	1
public static final int	INFO_BFACTOR	7
public static final int	INFO_CHAINID	6
public static final int	INFO_DESCRIPTION	0
public static final int	INFO_INTERACTION_ATOM_TYPE	2
public static final int	INFO_PPP	5
public static final int	INFO_RESSEQUENCE	8
public static final int	LIGAND	2
public static final int	PREOPTIMIZED	32
public static final int	RIGID	1

com.actelion.research.chem.MoleculeStandardizer

Modifier and Type	Constant Field	Value
public static final int	MODE_ADD_NA_AND_CL	2
public static final int	MODE_GET_PARENT	1

com.actelion.research.chem.MolfileParser

Modifier and Type	Constant Field	Value
public static final int	MODE_KEEP_HYDROGEN_MAP	1

com.actelion.research.chem.Mutation

Modifier and Type	Constant Field	Value
public static final int	MUTATION_ADD_ATOM	1
public static final int	MUTATION_CHANGE_ATOM	4
public static final int	MUTATION_CHANGE_BOND	64
public static final int	MUTATION_CHANGE_RING	256
public static final int	MUTATION_CLOSE_RING	32
public static final int	MUTATION_CLOSE_RING_AND_AROMATIZE	512
public static final int	MUTATION_CUTOUT_ATOM	8
public static final int	MUTATION_CUTOUT_SFRAGMENT	16384
public static final int	MUTATION_DELETE_ATOM	16
public static final int	MUTATION_DELETE_BOND	128
public static final int	MUTATION_DELETE_SUBSTITUENT	8192
public static final int	MUTATION_INSERT_ATOM	2
public static final int	MUTATION_INVERT_PARITY	32768
public static final int	MUTATION_MIGRATE	2048
public static final int	MUTATION_SWAP_SUBSTITUENT	4096
public static final int	MUTATION_TOGGLE_AMID_SULFONAMID	1024

com.actelion.research.chem.Mutator

Modifier and Type	Constant Field	Value
public static final int	MUTATION_ANY	65535
public static final int	MUTATION_GROW	3
public static final int	MUTATION_KEEP_SIZE	40932
public static final int	MUTATION_SHRINK	24600

com.actelion.research.chem.PeriodicTable

Modifier and Type	Constant Field	Value
public static final int	Bromine	35
public static final int	Carbon	6
public static final int	Chlorine	17
public static final int	ConnectionPoint	0
public static final int	Fluorine	9
public static final int	Hydrogen	1
public static final int	Iodine	53
public static final int	Nitrogen	7
public static final int	Oxygen	8
public static final int	Phosphorus	15
public static final int	Silicon	14
public static final int	Sulfur	16

com.actelion.research.chem.RingCollection

Modifier and Type	Constant Field	Value
public static final int	MAX_SMALL_RING_SIZE	7
public static final int	MODE_SMALL_AND_LARGE_RINGS	3
public static final int	MODE_SMALL_AND_LARGE_RINGS_AND_AROMATICITY	7
public static final int	MODE_SMALL_RINGS_AND_AROMATICITY	5
public static final int	MODE_SMALL_RINGS_ONLY	1

com.actelion.research.chem.SDFileMolecule

Modifier and Type	Constant Field	Value
public static final transient java.lang.String	CMNT_FIELD	"CMNT"
public static final transient java.lang.String	DENSITY_FIELD	"DENSITY"
public static final transient java.lang.String	ID_FIELD	"ID"
public static final transient java.lang.String	NAME_FIELD	"NAME"
public static final transient java.lang.String	PURITY_FIELD	"PURITY"

com.actelion.research.chem.SimpleCanonizer

Modifier and Type	Constant Field	Value
public static final int	MAX_ATOM_BITS	8

com.actelion.research.chem.SSSearcher

Modifier and Type	Constant Field	Value
public static final int	cCountModeExistance	1
public static final int	cCountModeFirstMatch	2
public static final int	cCountModeOverlapping	4
public static final int	cCountModeRigorous	5
public static final int	cCountModeSeparated	3
public static final int	cDefaultMatchMode	8
public static final int	cIndexMatchMode	4
public static final int	cMatchAromDBondToDelocalized	8
public static final int	cMatchAtomCharge	1
public static final int	cMatchAtomMass	2
public static final int	cMatchDBondToDelocalized	4

com.actelion.research.chem.SSSearcherWithIndex

Modifier and Type	Constant Field	Value
public static final java.lang.String	cIndexVersion	"1.2.1"

com.actelion.research.chem.StereoMolecule

Modifier and Type	Constant Field	Value
public static final java.lang.String	VALIDATION_ERROR_AMBIGUOUS_CONFIGURATION	"Ambiguous configuration at stereo center because of 2 parallel bonds"
public static final java.lang.String	VALIDATION_ERROR_ESR_CENTER_UNKNOWN	"Members of ESR groups must only be stereo centers with known configuration."
public static final java.lang.String	VALIDATION_ERROR_OVER_UNDER_SPECIFIED	"Over- or under-specified stereo feature or more than one racemic type bond"

com.actelion.research.chem.StructureInfo

Modifier and Type	Constant Field	Value
public static final java.lang.String	FLD_CMNT	"FLD_CMNT"
public static final java.lang.String	FLD_DENSITY	"FLD_DENSITY"
public static final java.lang.String	FLD_ID	"FLD_ID"
public static final java.lang.String	FLD_NAME	"FLD_NAME"
public static final java.lang.String	FLD_PURITY	"FLD_PURITY"

com.actelion.research.chem.StructureSearchDataSource

Modifier and Type	Constant Field	Value
public static final long	SEARCH_TYPE_NOT_SUPPORTED	-1L

com.actelion.research.chem.StructureSearchSpecification

Modifier and Type	Constant Field	Value
public static final int	MODE_LARGEST_FRAGMENT_ONLY	256
public static final int	TYPE_BACKBONE_NO_STEREO	7
public static final int	TYPE_EXACT_NO_STEREO	4
public static final int	TYPE_EXACT_STRICT	3
public static final int	TYPE_NO_STRUCTURE	0
public static final int	TYPE_SIMILARITY	2
public static final int	TYPE_SUBSTRUCTURE	1
public static final int	TYPE_TAUTOMER	5
public static final int	TYPE_TAUTOMER_NO_STEREO	6

com.actelion.research.chem.SVGDepictor

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_ELEM_WIDTH	8

com.actelion.research.chem.TextDrawingObject

Modifier and Type	Constant Field	Value
public static final double	DEFAULT_SIZE	9.0
public static final int	DEFAULT_STYLE	0
public static final java.lang.String	TYPE_STRING	"text"

com.actelion.research.chem.conf.BondLengthSet

Modifier and Type	Constant Field	Value
public static final float	DEFAULT_BOND_LENGTH	2.000499963760376f
public static final float	DEFAULT_BOND_STDDEV	1.0f

com.actelion.research.chem.conf.TorsionDB

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_MERGE_SPAN	15
public static final int	MODE_ANGLES	1
public static final int	MODE_BINS	2
public static final int	TORSION_GREEN	0
public static final int	TORSION_NOT_FOUND	-1
public static final int	TORSION_RED	2
public static final int	TORSION_YELLOW	1

com.actelion.research.chem.conf.TorsionDetail

Modifier and Type	Constant Field	Value
public static final int	SYMMETRY_C1C1_OR_C1D1	0
public static final int	SYMMETRY_C1D2	1
public static final int	SYMMETRY_D1D1	2
public static final int	SYMMETRY_D1D2_OR_D2D2	3

com.actelion.research.chem.conf.torsionstrain.StatisticalTorsionPotential

Modifier and Type	Constant Field	Value
public static final double	BIN_SIZE	5.0
public static final double	CHI	1.0E-4
public static final double	MAX	10.0
public static final double	OCCURENCE_CUTOFF	500.0

com.actelion.research.chem.contrib.HoseCodeCreator

Modifier and Type	Constant Field	Value
public static final int	FULL_HOSE_CODE	0
public static final int	HOSE_CODE_CUT_C_SP3_SP3	1

com.actelion.research.chem.coords.CoordinateInventor

Modifier and Type	Constant Field	Value
protected static final int	MODE_CONSIDER_MARKED_ATOMS	12
public static final int	MODE_KEEP_MARKED_ATOM_COORDS	4
public static final int	MODE_PREFER_MARKED_ATOM_COORDS	8
public static final int	MODE_REMOVE_HYDROGEN	2
public static final int	MODE_SKIP_DEFAULT_TEMPLATES	1

com.actelion.research.chem.descriptor.DescriptorConstants

Modifier and Type	Constant Field	Value
public static final int	DESCRIPTOR_TYPE_MOLECULE	1
public static final int	DESCRIPTOR_TYPE_REACTION	2
public static final int	DESCRIPTOR_TYPE_UNKNOWN	-1

com.actelion.research.chem.descriptor.DescriptorEncoder

Modifier and Type	Constant Field	Value
public static final int	MAX_COUNT_VALUE	63

com.actelion.research.chem.descriptor.DescriptorHandler<T,U>

Modifier and Type	Constant Field	Value
public static final java.lang.String	FAILED_STRING	"Calculation Failed"

com.actelion.research.chem.descriptor.DescriptorHandlerFFP512

Modifier and Type	Constant Field	Value
public static final java.lang.String	VERSION	"1.2.1"

com.actelion.research.chem.descriptor.DescriptorHandlerFlexophore

Modifier and Type	Constant Field	Value
public static final boolean	DEBUG	false
protected static final int	MAX_NUM_HEAVY_ATOMS	70
public static final int	MAX_NUM_SOLUTIONS	1000
protected static final int	MIN_NUM_ATOMS	6
public static final int	MODE_PPNODE_SIMILARITY_COMPARISON	1
public static final int	NUM_CONFORMATIONS	250
public static final java.lang.String	PARA_TAG_HISTOGRAM_SIMILARITY_THRESH	"ThreshHistogramSimilarity"
public static final java.lang.String	PARA_TAG_MODE_MATCH	"PPNodeMatchMode"
public static final java.lang.String	PARA_TAG_MODE_SINGLE_CONFORMATION_QUERY	"SingleConfQuery"
public static final java.lang.String	PARA_TAG_PPNODE_SIMILARITY_THRESH	"ThreshNodeSimilarity"
public static final java.lang.String	SEP_PARAMETER	","
public static final double	THRESH_HISTOGRAM_SIMILARITY	0.15
public static final double	THRESH_SIMILARITY_COMPARISON_NODE	0.9
public static final int	VERSION_INTERACTION_TABLES	-1

com.actelion.research.chem.descriptor.DescriptorHandlerLongFFP512

Modifier and Type	Constant Field	Value
public static final java.lang.String	VERSION	"1.2.1"

com.actelion.research.chem.descriptor.DescriptorHandlerReactionFP

Modifier and Type	Constant Field	Value
public static final java.lang.String	cVersion	"1.0.0"
public static final float	PERIPHERY_WEIGHT	0.19999998807907104f
public static final int	REACTION_CENTER_LONG_COUNT	8
public static final float	REACTION_CENTER_WEIGHT	0.800000011920929f

com.actelion.research.chem.descriptor.DescriptorHelper

Modifier and Type	Constant Field	Value
public static final java.lang.String	TAG_SIMILARITY	"Similarity"

com.actelion.research.chem.descriptor.SimilarityCalculatorDoubleArray

Modifier and Type	Constant Field	Value
public static final java.lang.String	NAME	"SimilarityCalculatorDoubleArray"
public static final java.lang.String	SHORT_NAME	"SimCalcDblArray"

com.actelion.research.chem.descriptor.flexophore.ConstantsFlexophore

Modifier and Type	Constant Field	Value
public static final int	FLAG_CENTER_ATOM	16
public static final int	MAX_NUM_NODES_FLEXOPHORE	64
public static final byte	MODE_HARD_PPPOINTS	1
public static final byte	MODE_SOFT_PPPOINTS	0

com.actelion.research.chem.descriptor.flexophore.ConstantsFlexophoreHardPPPoints

Modifier and Type	Constant Field	Value
public static final java.lang.String	ATTR_ACCEPTOR	"a"
public static final java.lang.String	ATTR_ALIPHATIC	"l"
public static final java.lang.String	ATTR_AROMATIC	"r"
public static final java.lang.String	ATTR_DONOR	"d"
public static final java.lang.String	ATTR_NEGATIVE_CHARGE	"-"
public static final java.lang.String	ATTR_POSITIVE_CHARGE	"+"

com.actelion.research.chem.descriptor.flexophore.MolDistHist

Modifier and Type	Constant Field	Value
public static final boolean	VERBOSE	false

com.actelion.research.chem.descriptor.flexophore.MolDistHistViz

Modifier and Type	Constant Field	Value
public static final int	CAPACITY_INEVITABLE_PPPOINTS	5
public static final int	DESCRIBE_ALL	1
public static final int	DESCRIBE_MAPPED	2
public static final java.lang.String	TAG_VIZ_INFO_ENCODED	"Flexophore2VizInfo"

com.actelion.research.chem.descriptor.flexophore.MolDistHistVizEncoder

Modifier and Type	Constant Field	Value
public static final java.lang.String	SEP	"-1"

com.actelion.research.chem.descriptor.flexophore.PPNode

Modifier and Type	Constant Field	Value
public static final int	DUMMY_INTERACT_ID	37
public static final int	INFO_DEFAULT	-1
public static final java.lang.String	MULT_FREQ	"*"
public static final int	NUM_BYTES_INTERACTION_TYPE	3
public static final java.lang.String	SEPARATOR_ATOMS	","

com.actelion.research.chem.descriptor.flexophore.UnparametrizedAtomTypeException

Modifier and Type	Constant Field	Value
public static final long	serialVersionUID	23072007L

com.actelion.research.chem.descriptor.flexophore.completegraphmatcher.ObjectiveBlurFlexophoreHardMatchUncovered

Modifier and Type	Constant Field	Value
public static final java.lang.String	INFO	""
public static final double	THRESH_HISTOGRAM_SIMILARITY	0.15
public static final java.lang.String	VERSION	"02.04.2020 08:00"

com.actelion.research.chem.descriptor.flexophore.completegraphmatcher.PPNodeSimilarity

Modifier and Type	Constant Field	Value
public static final double	HARD_MATCH_OPTIMISTIC_PERCENTILE	0.75
public static final int	SIMILARITY_MODE_CARBON	4
public static final int	SIMILARITY_MODE_HARD_THRESH	1
public static final int	SIMILARITY_MODE_HARD_THRESH_AVR	2
public static final int	SIMILARITY_MODE_HARD_THRESH_OPTIMISTIC	3
public static final int	SIMILARITY_MODE_SIMPLE	0
public static final double	THRESH_SIMILARITY_HARD_MATCH	0.9

com.actelion.research.chem.descriptor.flexophore.example.MatchFlexophoreNodesMain

Modifier and Type	Constant Field	Value
public static final java.lang.String	IDCODE_100	"ffchb@DXXJWb`dLbbRbrrTTRRMNRUGL@QSPPQQ@@@"
public static final java.lang.String	IDCODE_101	"fi{iA@IJcdn`Xa@cHhhdmDeDdmDjfBM[MXHHZj`bJp@@@"

com.actelion.research.chem.descriptor.flexophore.generator.ConstantsFlexophoreGenerator

Modifier and Type	Constant Field	Value
public static final int	BINS_HISTOGRAM	80
public static final int	INTERACTION_TYPE_NONE	-1
public static final boolean	OPTIMIZE_RIGID_FRAGS	false
public static final int	RANGE_HISTOGRAM	40

com.actelion.research.chem.descriptor.flexophore.generator.CreatorMolDistHistViz

Modifier and Type	Constant Field	Value
public static final int	CONF_GIVEN_SINGLE_CONFORMATION	1

com.actelion.research.chem.descriptor.pharmacophoretree.PharmacophoreNode

Modifier and Type	Constant Field	Value
public static final double	CHEM_SIM_WEIGHT	0.7
public static final int	LINK_NODE	6
public static final int	ZERO_NODE	1

com.actelion.research.chem.descriptor.pharmacophoretree.PharmacophoreTree

Modifier and Type	Constant Field	Value
public static final int	CUT_LEFT	-1
public static final int	CUT_NONE	0
public static final int	CUT_RIGHT	1

com.actelion.research.chem.descriptor.pharmacophoretree.PharmacophoreTreeGenerator

Modifier and Type	Constant Field	Value
public static final int	MAX_RING_SIZE	50

com.actelion.research.chem.descriptor.pharmacophoretree.TreeMatcher

Modifier and Type	Constant Field	Value
public static final double	ALPHA	0.8
public static final int	EXTENSION_MATCH_NODE_NR_LIMIT	3
public static final int	EXTENSION_MATCHES	3
public static final int	INITIAL_SPLITS	5
public static final double	MATCH_BALANCE	2.0
public static final int	MATCH_NODE_NR_LIMIT	2
public static final double	MATCH_SIZE_LIMIT	3.0
public static final double	NULL_MATCH_SCALING	0.5
public static final double	SIMILARITY_SCALING_SPLIT_SCORE	0.6
public static final double	SIZE_RATIO	2.0

com.actelion.research.chem.docking.DockingEngine

Modifier and Type	Constant Field	Value
public static final double	GRID_DIMENSION	6.0
public static final double	GRID_RESOLUTION	0.5
public static final double	MINI_CUTOFF	100.0

com.actelion.research.chem.docking.scoring.plp.REPTerm

Modifier and Type	Constant Field	Value
public static final double	A	3.2
public static final double	B	5.0
public static final double	B_sq	25.0
public static final double	C	0.05
public static final double	D	20.0

com.actelion.research.chem.forcefield.AbstractForceField

Modifier and Type	Constant Field	Value
public static final double	EPS	3.0E-8
public static final double	FUNCTOL	1.0E-4
public static final double	MAXSTEP	100.0
public static final double	MOVETOL	1.0E-7
public static final double	TOLX	1.2E-7

com.actelion.research.chem.forcefield.mmff.Constants

Modifier and Type	Constant Field	Value
public static final double	DEG2RAD	0.017453292519943295
public static final double	MDYNE_A_TO_KCAL_MOL	143.9325
public static final double	RAD2DEG	57.29577951308232

com.actelion.research.chem.forcefield.mmff.ForceFieldMMFF94

Modifier and Type	Constant Field	Value
public static final java.lang.String	MMFF94	"MMFF94"
public static final java.lang.String	MMFF94S	"MMFF94s"
public static final java.lang.String	MMFF94SPLUS	"MMFF94s+"

com.actelion.research.chem.forcefield.mmff.table.VanDerWaals

Modifier and Type	Constant Field	Value
public final double	b	0.2
public final double	beta	12.0
public final double	daeps	0.5
public final double	darad	0.8
public final double	power	0.25

com.actelion.research.chem.interactionstatistics.InteractionDistanceStatistics

Modifier and Type	Constant Field	Value
public static final double	BIN_SIZE	0.2
public static final double	CHI	1.0E-4
public static final double	CUTOFF_RADIUS	6.0
public static final double	MAX	10.0
public static final double	OCCURENCE_CUTOFF	500.0

com.actelion.research.chem.io.CompoundFileHelper

Modifier and Type	Constant Field	Value
public static final int	cFileTypeDataWarrior	1
public static final int	cFileTypeDataWarriorCompatibleData	49393
public static final int	cFileTypeDataWarriorMacro	8
public static final int	cFileTypeDataWarriorQuery	4
public static final int	cFileTypeDataWarriorTemplate	2
public static final int	cFileTypeDataWarriorTemplateContaining	7
public static final int	cFileTypeDirectory	-2
public static final int	cFileTypeGIF	2048
public static final int	cFileTypeJPG	1024
public static final int	cFileTypeMask	262143
public static final int	cFileTypeMOL	65536
public static final int	cFileTypeMOL2	131072
public static final int	cFileTypePDB	262144
public static final int	cFileTypePictureFile	15360
public static final int	cFileTypePNG	4096
public static final int	cFileTypeRD	49152
public static final int	cFileTypeRDV2	32768
public static final int	cFileTypeRDV3	16384
public static final int	cFileTypeRXN	256
public static final int	cFileTypeSD	192
public static final int	cFileTypeSDV2	128
public static final int	cFileTypeSDV3	64
public static final int	cFileTypeSOM	512
public static final int	cFileTypeSVG	8192
public static final int	cFileTypeText	48
public static final int	cFileTypeTextCommaSeparated	32
public static final int	cFileTypeTextTabDelimited	16
public static final int	cFileTypeUnknown	-1

com.actelion.research.chem.io.CompoundTableConstants

Modifier and Type	Constant Field	Value
public static final boolean	cAllowLogModeForNegativeOrZeroValues	true
public static final java.lang.String	cAutoStartMacro	"autoStartMacro"
public static final java.lang.String	cColumnName	"columnName"
public static final java.lang.String	cColumnNameRowList	"List \'"
public static final java.lang.String	cColumnProperty	"columnProperty"
public static final java.lang.String	cColumnPropertyBinBase	"binBase"
public static final java.lang.String	cColumnPropertyBinIsDate	"binIsDate"
public static final java.lang.String	cColumnPropertyBinIsLog	"binIsLog"
public static final java.lang.String	cColumnPropertyBinSize	"binSize"
public static final java.lang.String	cColumnPropertyCommentDepartment	"commentDepartment"
public static final java.lang.String	cColumnPropertyCommentUploadStatus	"commentUploadStatus"
public static final java.lang.String	cColumnPropertyCyclicDataMax	"cyclicDataMax"
public static final java.lang.String	cColumnPropertyDataMax	"dataMax"
public static final java.lang.String	cColumnPropertyDataMin	"dataMin"
public static final java.lang.String	cColumnPropertyDescriptorVersion	"version"
public static final java.lang.String	cColumnPropertyDetailCount	"detailCount"
public static final java.lang.String	cColumnPropertyDetailName	"detailName"
public static final java.lang.String	cColumnPropertyDetailSeparator	"detailSeparator"
public static final java.lang.String	cColumnPropertyDetailSource	"detailSource"
public static final java.lang.String	cColumnPropertyDetailType	"detailType"
public static final java.lang.String	cColumnPropertyDisplayGroup	"displayGroup"
public static final java.lang.String	cColumnPropertyEnd	"</column properties>"
public static final java.lang.String	cColumnPropertyFormula	"formula"
public static final java.lang.String	cColumnPropertyGroupName	"groupName"
public static final java.lang.String	cColumnPropertyImagePath	"imagePath"
public static final java.lang.String	cColumnPropertyIsClusterNo	"isClusterNo"
public static final java.lang.String	cColumnPropertyIsDisplayable	"isDisplayable"
public static final java.lang.String	cColumnPropertyIsFragment	"isFragment"
public static final java.lang.String	cColumnPropertyLaunchAllowMultiple	"launchAllowMultiple"
public static final java.lang.String	cColumnPropertyLaunchCommand	"launchCommand"
public static final java.lang.String	cColumnPropertyLaunchCount	"launchCount"
public static final java.lang.String	cColumnPropertyLaunchDecoration	"launchDecoration"
public static final java.lang.String	cColumnPropertyLaunchName	"launchName"
public static final java.lang.String	cColumnPropertyLaunchOption	"launchOption"
public static final java.lang.String	cColumnPropertyLookupCount	"lookupCount"
public static final java.lang.String	cColumnPropertyLookupDetailURL	"lookupDetailURL"
public static final java.lang.String	cColumnPropertyLookupEncode	"lookupEncode"
public static final java.lang.String	cColumnPropertyLookupFilter	"lookupFilter"
public static final java.lang.String	cColumnPropertyLookupFilterRemoveMinus	"lookupFilterRemoveMinus"
public static final java.lang.String	cColumnPropertyLookupName	"lookupName"
public static final java.lang.String	cColumnPropertyLookupURL	"lookupURL"
public static final java.lang.String	cColumnPropertyOpenExternalName	"openExternalName"
public static final java.lang.String	cColumnPropertyOpenExternalPath	"openExternalPath"
public static final java.lang.String	cColumnPropertyOrbitType	"orbitType"
public static final java.lang.String	cColumnPropertyParentColumn	"parent"
public static final java.lang.String	cColumnPropertyReactionPart	"reactionPart"
public static final java.lang.String	cColumnPropertyReferencedColumn	"refColumn"
public static final java.lang.String	cColumnPropertyReferenceStrengthColumn	"refStrengthColumn"
public static final java.lang.String	cColumnPropertyReferenceType	"refType"
public static final java.lang.String	cColumnPropertyReferenceTypeRedundant	"redundant"
public static final java.lang.String	cColumnPropertyReferenceTypeTopDown	"topdown"
public static final java.lang.String	cColumnPropertyRelatedCatalystColumn	"catalystColumn"
public static final java.lang.String	cColumnPropertyRelatedIdentifierColumn	"idColumn"
public static final java.lang.String	cColumnPropertySpecialType	"specialType"
public static final java.lang.String	cColumnPropertyStart	"<column properties>"
public static final java.lang.String	cColumnPropertySuperpose	"superpose"
public static final java.lang.String	cColumnPropertySuperposeAlign	"align"
public static final java.lang.String	cColumnPropertySuperposeMolecule	"superposeMol"
public static final java.lang.String	cColumnPropertyUseThumbNail	"useThumbNail"
public static final java.lang.String	cColumnType2DCoordinates	"idcoordinates2D"
public static final java.lang.String	cColumnType3DCoordinates	"idcoordinates3D"
public static final java.lang.String	cColumnTypeAtomColorInfo	"atomColorInfo"
public static final java.lang.String	cColumnTypeIDCode	"idcode"
public static final java.lang.String	cColumnTypeReactionMapping	"atomMapping"
public static final java.lang.String	cColumnTypeReactionObjects	"reactionObjects"
public static final java.lang.String	cColumnTypeRXNCode	"rxncode"
public static final java.lang.String	cColumnUnassignedCode	"<none>"
public static final java.lang.String	cColumnUnassignedItemText	"<Unassigned>"
public static final java.lang.String	cDataDependentPropertiesEnd	"</data dependent properties>"
public static final java.lang.String	cDataDependentPropertiesStart	"<data dependent properties type=\""
public static final int	cDataTypeAutomatic	0
public static final int	cDataTypeDate	3
public static final int	cDataTypeFloat	1
public static final int	cDataTypeInteger	2
public static final int	cDataTypeString	4
public static final java.lang.String	cDefaultDetailSeparator	"|#|"
public static final java.lang.String	cDetailDataEnd	"</detail data>"
public static final java.lang.String	cDetailDataStart	"<detail data>"
public static final java.lang.String	cDetailID	"detailID"
public static final java.lang.String	cDetailIndexSeparator	":"
public static final java.lang.String	cEntrySeparator	"; "
public static final java.lang.String	cExtensionNameFileExplanation	"explanation"
public static final java.lang.String	cExtensionNameMacroList	"macroList"
public static final java.lang.String	cFileExplanationEnd	"</datawarrior explanation>"
public static final java.lang.String	cFileExplanationStart	"<datawarrior explanation>"
public static final java.lang.String	cHitlistData	"hitlistData"
public static final java.lang.String	cHitlistDataEnd	"</hitlist data>"
public static final java.lang.String	cHitlistDataStart	"<hitlist data>"
public static final java.lang.String	cHitlistName	"hitlistName"
public static final java.lang.String	cLineSeparator	"\n"
public static final byte	cLineSeparatorByte	10
public static final java.lang.String	cMacroListEnd	"</datawarrior macroList>"
public static final java.lang.String	cMacroListStart	"<datawarrior macroList>"
public static final int	cMaxDateOrDoubleCategoryCount	16384
public static final int	cMaxTextCategoryCount	65536
public static final java.lang.String	cNativeFileCreated	"created"
public static final java.lang.String	cNativeFileHeaderEnd	"</datawarrior-fileinfo>"
public static final java.lang.String	cNativeFileHeaderStart	"<datawarrior-fileinfo>"
public static final java.lang.String	cNativeFileRowCount	"rowcount"
public static final java.lang.String	cNativeFileVersion	"version"
public static final java.lang.String	cPropertiesEnd	"</datawarrior properties>"
public static final java.lang.String	cPropertiesStart	"<datawarrior properties>"
public static final java.lang.String	cRangeNotAvailable	"<none>"
public static final java.lang.String	cRangeSeparation	" <= x < "
public static final int	cReactionHiliteModeNone	2
public static final int	cReactionHiliteModeReactionCenter	0
public static final java.lang.String	cReactionPartDelimiter	" of "
public static final java.lang.String	cReactionPartProducts	"products"
public static final java.lang.String	cReactionPartReactants	"reactants"
public static final java.lang.String	cReactionPartReaction	"reaction"
public static final int	cStructureHiliteModeCurrentRow	1
public static final int	cStructureHiliteModeFilter	0
public static final int	cStructureHiliteModeNone	2
public static final int	cSummaryModeMaximum	4
public static final int	cSummaryModeMean	1
public static final int	cSummaryModeMedian	2
public static final int	cSummaryModeMinimum	3
public static final int	cSummaryModeNormal	0
public static final int	cSummaryModeSum	5
public static final java.lang.String	cSuperposeAlignValueShape	"shape"
public static final java.lang.String	cSuperposeValueReferenceRow	"refRow"
public static final java.lang.String	cTemplateTagName	"datawarrior properties"
public static final int	cTextExclusionTypeContains	1
public static final int	cTextExclusionTypeEndsWith	3
public static final int	cTextExclusionTypeEquals	4
public static final int	cTextExclusionTypeRegEx	5
public static final int	cTextExclusionTypeStartsWith	2
public static final java.lang.String	cTextMultipleCategories	"<multiple categories>"
public static final java.lang.String	cViewConfigTagName	"view configuration"
public static final java.lang.String	cViewNameEnd	"</view>"
public static final java.lang.String	cViewNameStart	"<view name=\""
public static final java.lang.String	NEWLINE_REGEX	"\\r?\\n|\\r"
public static final java.lang.String	NEWLINE_STRING	"<NL>"
public static final java.lang.String	TAB_STRING	"<TAB>"

com.actelion.research.chem.io.DWARFileParser

Modifier and Type	Constant Field	Value
public static final int	MODE_BUFFER_HEAD_AND_TAIL	8
public static final int	MODE_COORDINATES_PREFER_2D	1
public static final int	MODE_COORDINATES_PREFER_3D	2
public static final int	MODE_COORDINATES_REQUIRE_2D	3
public static final int	MODE_COORDINATES_REQUIRE_3D	4
public static final int	MODE_EXTRACT_DETAILS	16

com.actelion.research.chem.io.Mol2FileParser

Modifier and Type	Constant Field	Value
public static final int	iAMPAC_CHARGES	7
public static final int	iDEL_RE	1
public static final int	iDICT_CHARGES	9
public static final int	iGAST_HUCK	3
public static final int	iGASTEIGER	2
public static final int	iGAUSS80_CHARGES	6
public static final int	iHUCKEL	4
public static final int	iMMFF94_CHARGES	10
public static final int	iMULLIKEN_CHARGES	8
public static final int	iNO_CHARGES	0
public static final int	iPULLMAN	5
public static final int	iUSER_CHARGES	11

com.actelion.research.chem.io.RDFileParser

Modifier and Type	Constant Field	Value
public static final java.lang.String	cNewLineString	"\n"

com.actelion.research.chem.io.RXNFileCreator

Modifier and Type	Constant Field	Value
public static final java.lang.String	RXN_CODE_TAG	"OCL_RXN_V1.0:"

com.actelion.research.chem.io.RXNFileV3Creator

Modifier and Type	Constant Field	Value
public static final java.lang.String	RXN_CODE_TAG	"OCL_RXN_V1.0:"

com.actelion.research.chem.io.SDFileParser

Modifier and Type	Constant Field	Value
public static final java.lang.String	cNewLineString	"\n"

com.actelion.research.chem.io.pdb.converter.AminoAcidsLabeledContainer

Modifier and Type	Constant Field	Value
public static final int	AMINO_ACIDS	20

com.actelion.research.chem.io.pdb.converter.ConstantsAminoAcidsLabeled

Modifier and Type	Constant Field	Value
public static final java.lang.String	RESOURCE_AAS_LABELED	"/resources/pdb/aminoAcidsLabeled.txt"
public static final java.lang.String	TAG_AAS_ABBR1	"Abbreviation1"
public static final java.lang.String	TAG_AAS_NAME	"Name"

com.actelion.research.chem.io.pdb.parser.PDBFileParser

Modifier and Type	Constant Field	Value
public static final java.lang.String	DATE_FORMAT	"dd-MMM-yy"
public static final java.lang.String	TAG_ANISOU	"ANISOU"
public static final java.lang.String	TAG_ATOM	"ATOM"
public static final java.lang.String	TAG_AUTHOR	"AUTHOR"
public static final java.lang.String	TAG_CAVEAT	"CAVEAT"
public static final java.lang.String	TAG_CISPEP	"CISPEP"
public static final java.lang.String	TAG_COMPND	"COMPND"
public static final java.lang.String	TAG_CONECT	"CONECT"
public static final java.lang.String	TAG_CRYST1	"CRYST1"
public static final java.lang.String	TAG_DBREF	"DBREF"
public static final java.lang.String	TAG_DBREF1_DBREF2	"DBREF1/DBREF2"
public static final java.lang.String	TAG_END	"END"
public static final java.lang.String	TAG_ENDMDL	"ENDMDL"
public static final java.lang.String	TAG_EXPDTA	"EXPDTA"
public static final java.lang.String	TAG_FORMUL	"FORMUL"
public static final java.lang.String	TAG_HEADER	"HEADER"
public static final java.lang.String	TAG_HELIX	"HELIX"
public static final java.lang.String	TAG_HET	"HET"
public static final java.lang.String	TAG_HETATM	"HETATM"
public static final java.lang.String	TAG_HETNAM	"HETNAM"
public static final java.lang.String	TAG_HETSYN	"HETSYN"
public static final java.lang.String	TAG_JRNL	"JRNL"
public static final java.lang.String	TAG_KEYWDS	"KEYWDS"
public static final java.lang.String	TAG_LINK	"LINK"
public static final java.lang.String	TAG_MASTER	"MASTER"
public static final java.lang.String	TAG_MDLTYP	"MDLTYP"
public static final java.lang.String	TAG_MODEL	"MODEL"
public static final java.lang.String	TAG_MODRES	"MODRES"
public static final java.lang.String	TAG_MTRIX1	"MTRIX1"
public static final java.lang.String	TAG_MTRIX2	"MTRIX2"
public static final java.lang.String	TAG_MTRIX3	"MTRIX3"
public static final java.lang.String	TAG_NUMMDL	"NUMMDL"
public static final java.lang.String	TAG_OBSOLTE	"OBSLTE"
public static final java.lang.String	TAG_ORIGX1	"ORIGX1"
public static final java.lang.String	TAG_ORIGX2	"ORIGX2"
public static final java.lang.String	TAG_ORIGX3	"ORIGX3"
public static final java.lang.String	TAG_REMARK	"REMARK"
public static final java.lang.String	TAG_REMARK_N	"REMARK N"
public static final java.lang.String	TAG_REMARK0	"REMARK 0"
public static final java.lang.String	TAG_REMARK1	"REMARK 1"
public static final java.lang.String	TAG_REMARK2	"REMARK 2"
public static final java.lang.String	TAG_REMARK3	"REMARK 3"
public static final java.lang.String	TAG_REVDAT	"REVDAT"
public static final java.lang.String	TAG_SCALE1	"SCALE1"
public static final java.lang.String	TAG_SCALE2	"SCALE2"
public static final java.lang.String	TAG_SCALE3	"SCALE3"
public static final java.lang.String	TAG_SEQADV	"SEQADV"
public static final java.lang.String	TAG_SEQRES	"SEQRES"
public static final java.lang.String	TAG_SHEET	"SHEET"
public static final java.lang.String	TAG_SITE	"SITE"
public static final java.lang.String	TAG_SOURCE	"SOURCE"
public static final java.lang.String	TAG_SPLIT	"SPLIT"
public static final java.lang.String	TAG_SPRSDE	"SPRSDE"
public static final java.lang.String	TAG_SSBOND	"SSBOND"
public static final java.lang.String	TAG_TER	"TER"
public static final java.lang.String	TAG_TITLE	"TITLE"

com.actelion.research.chem.io.pdb.parser.StructureAssembler

Modifier and Type	Constant Field	Value
public static final java.lang.String	LIGAND_GROUP	"ligand"
public static final java.lang.String	PROTEIN_GROUP	"protein"
public static final java.lang.String	SOLVENT_GROUP	"water"

com.actelion.research.chem.mcs.ExhaustiveFragmentGeneratorBonds

Modifier and Type	Constant Field	Value
public static final long	LIMIT_NEIGHBOURS_SINCE_LAST_ADDED	100000000L

com.actelion.research.chem.mcs.MCS

Modifier and Type	Constant Field	Value
public static final int	PAR_CLEAVE_RINGS	0
public static final int	PAR_KEEP_AROMATIC_RINGS	2
public static final int	PAR_KEEP_RINGS	1

com.actelion.research.chem.mcs.MCSFast

Modifier and Type	Constant Field	Value
public static final int	PAR_CLEAVE_RINGS	0
public static final int	PAR_KEEP_AROMATIC_RINGS	2
public static final int	PAR_KEEP_RINGS	1

com.actelion.research.chem.phesa.Gaussian3D

Modifier and Type	Constant Field	Value
public static final double	DIST_CUTOFF	10.0

com.actelion.research.chem.phesa.MolecularVolume

Modifier and Type	Constant Field	Value
public static final double	alpha_pref	2.41798793102
public static final double	p	2.82842712475

com.actelion.research.chem.phesa.VolumeGaussian

Modifier and Type	Constant Field	Value
public static final int	EXCLUSION	-1
public static final int	INCLUSION	1

com.actelion.research.chem.phesa.pharmacophore.PharmacophoreCalculator

Modifier and Type	Constant Field	Value
public static final int	ACCEPTOR_ID	0
public static final int	AROM_ID	4
public static final int	AROM_RING_ID	6
public static final int	CHARGE_NEG_ID	2
public static final int	CHARGE_POS_ID	3
public static final int	DONOR_ID	1
public static final int	EXIT_VECTOR_ID	7
public static final int	LIPO_ID	5
public static final int	MAX_ID	7

com.actelion.research.chem.phesaflex.FlexibleShapeAlignment

Modifier and Type	Constant Field	Value
public static final double	ENERGY_CUTOFF	10.0

com.actelion.research.chem.prediction.CLogPPredictor

Modifier and Type	Constant Field	Value
public static final float	cCLogPUnknown	-999.0f

com.actelion.research.chem.prediction.DruglikenessPredictor

Modifier and Type	Constant Field	Value
public static final double	cDruglikenessUnknown	-999.0

com.actelion.research.chem.prediction.DruglikenessPredictorWithIndex

Modifier and Type	Constant Field	Value
public static final double	cDruglikenessUnknown	-999.0

com.actelion.research.chem.prediction.MolecularPropertyHelper

Modifier and Type	Constant Field	Value
public static final int	MOLECULAR_PROPERTY_ACIDIC_OXYGENS	14
public static final int	MOLECULAR_PROPERTY_AROMRINGCOUNT	12
public static final int	MOLECULAR_PROPERTY_BASIC_NITROGENS	13
public static final int	MOLECULAR_PROPERTY_CLOGP	1
public static final int	MOLECULAR_PROPERTY_CLOGS	2
public static final int	MOLECULAR_PROPERTY_COMPLEXITY	7
public static final int	MOLECULAR_PROPERTY_FLEXIBILITY	6
public static final int	MOLECULAR_PROPERTY_HACCEPTORS	5
public static final int	MOLECULAR_PROPERTY_HDONORS	4
public static final int	MOLECULAR_PROPERTY_MOLWEIGHT	0
public static final int	MOLECULAR_PROPERTY_ROTATABLEBONDS	9
public static final int	MOLECULAR_PROPERTY_SHAPE	8
public static final int	MOLECULAR_PROPERTY_SMALLRINGCOUNT	11
public static final int	MOLECULAR_PROPERTY_STEREOCENTERS	10
public static final int	MOLECULAR_PROPERTY_TPSA	3

com.actelion.research.chem.prediction.ParameterizedStringList

Modifier and Type	Constant Field	Value
public static final int	cStringTypeDouble	3
public static final int	cStringTypeIDCode	1
public static final int	cStringTypeText	2

com.actelion.research.chem.prediction.PolarSurfaceAreaPredictor

Modifier and Type	Constant Field	Value
public static final float	cPSAUnknown	-1.0f

com.actelion.research.chem.prediction.SolubilityPredictor

Modifier and Type	Constant Field	Value
public static final float	cSolubilityUnknown	-999.0f

com.actelion.research.chem.prediction.TotalSurfaceAreaPredictor

Modifier and Type	Constant Field	Value
public static final float	cPSAUnknown	-1.0f

com.actelion.research.chem.prediction.ToxicityPredictor

Modifier and Type	Constant Field	Value
public static final int	cHighRisk	3
public static final int	cLowRisk	2
public static final int	cNoRisk	1
public static final int	cRiskTypeIrritant	2
public static final int	cRiskTypeMutagenic	0
public static final int	cRiskTypeReproductiveEffective	3
public static final int	cRiskTypes	4
public static final int	cRiskTypeTumorigenic	1
public static final int	cUnknownRisk	0

com.actelion.research.chem.properties.complexity.BitArray128

Modifier and Type	Constant Field	Value
public static final int	MAX_NUM_BITS	128

com.actelion.research.chem.properties.complexity.ExhaustiveFragmentsStatistics

Modifier and Type	Constant Field	Value
public static final int	MINLEN_FRAG	1

com.actelion.research.chem.properties.complexity.ModelExhaustiveStatistics

Modifier and Type	Constant Field	Value
public static final java.lang.String	TAG_ModelExhaustiveStatistics	"ModelExhaustiveStatistics"

com.actelion.research.chem.properties.complexity.MultipleNonOverlapSolution

Modifier and Type	Constant Field	Value
public static final java.lang.String	TAG_MultipleNonOverlapSolution	"MultipleNonOverlapSolution"

com.actelion.research.chem.properties.complexity.ObjectiveExhaustiveStatistics

Modifier and Type	Constant Field	Value
public static final double	ALMOST_ZERO	1.0E-6
public static final double	BASE_LOG	2.718281828459045
public static final int	DELTA_BONDS	1
public static final int	NUM_BONDS_START_REGRESSION_SMALL_MOLECULE	1

com.actelion.research.chem.properties.complexity.ResultFragmentsStatistic

Modifier and Type	Constant Field	Value
public static final java.lang.String	TAG_ResultFragmentsStatistic	"ResultFragmentsStatistic"

com.actelion.research.chem.properties.complexity.SummaryFragments

Modifier and Type	Constant Field	Value
public static final java.lang.String	TAG_COMPLEXITY	"Complexity"
public static final java.lang.String	TAG_MAXIMUM_SLOPE	"MaxSlope"
public static final java.lang.String	TAG_NUM_BONDS_AT_MAXIMUM_FREQ	"NumBondsAtMaxFreq"
public static final java.lang.String	TAG_NUM_BONDS_AT_MAXIMUM_SLOPE	"NumBondsAtMaxSlope"
public static final java.lang.String	TAG_RATIO_NON_SYMMETRIC_ATOMS	"RatioNonSymmetricAtoms"
public static final java.lang.String	TAG_RATIO_USED_BONDS_UP_TO_MAX_FREQ	"RatioUsedBondsUpToMaxFreq"
public static final java.lang.String	TAG_SUM_UNIQUE_FRAGMENTS_UNTIL_MAX	"SumUniqueFragmentsUntilMaxFrags"

com.actelion.research.chem.properties.fractaldimension.FractalDimensionMoleculeMain

Modifier and Type	Constant Field	Value
public static final java.lang.String	PREFIX_OUTPUT	"fractalDimensionMoleculeResult"

com.actelion.research.chem.properties.fractaldimension.ResultFracDimCalc

Modifier and Type	Constant Field	Value
public static final java.lang.String	SEP	"\t"
public static final java.lang.String	TAG_BONDS_AT_MAX_FRAGS_CALC	"BondNumberAtMaxNumFragCalculated"
public static final java.lang.String	TAG_FRACTAL_DIM	"FractalDimension"
public static final java.lang.String	TAG_ID	"MoleculeId"
public static final java.lang.String	TAG_MAX_NUM_UNIQUE_FRAGMENTS_CALC	"MaxNumUniqueFragmentsCalculated"
public static final java.lang.String	TAG_MESSAGE	"Message"
public static final java.lang.String	TAG_SMILES	"SMILES"
public static final java.lang.String	TAG_SUM_UNIQUE_FRAGMENTS_CALC	"SumUniqueFragmentsCalculated"

com.actelion.research.chem.reaction.Classification

Modifier and Type	Constant Field	Value
public static final int	INDEXLEN	4
public static final int	MAXENDUR	10
public static final int	MAXFLASH	10
public static final int	MAXINDICES	8
public static final int	MAXUNITS	16

com.actelion.research.chem.reaction.ReactionArrow

Modifier and Type	Constant Field	Value
public static final java.lang.String	TYPE_STRING	"arrow"

com.actelion.research.chem.reaction.ReactionClassifier

Modifier and Type	Constant Field	Value
public static final int	cError2AlphasInSameStrand	20
public static final int	cErrorCCBondCleavageLimit	15
public static final int	cErrorCCBondCreationLimit	16
public static final int	cErrorComplexReaction	17
public static final int	cErrorCRClassifyError	22
public static final int	cErrorDRClassifyError	23
public static final int	cErrorDupProdMapNoDifEd	7
public static final int	cErrorEductMapNoOverused	2
public static final int	cErrorEduFragPartMapped	10
public static final int	cErrorForkedOrLongStrand	19
public static final int	cErrorFragmentAtomLimit	11
public static final int	cErrorHRClassifyError	21
public static final int	cErrorIncoOrLeavMissing	26
public static final int	cErrorMapNoNotInEduct	6
public static final int	cErrorMapNoNotInProduct	5
public static final int	cErrorNoChangeNorEFG	1
public static final int	cErrorNoChangingAtoms	18
public static final int	cErrorNoDatabaseReaction	28
public static final int	cErrorNoError	0
public static final int	cErrorProdFragPartMapped	12
public static final int	cErrorProdMapNoOverused1	3
public static final int	cErrorProdMapNoOverused2	4
public static final int	cErrorProdRemapFailed	9
public static final int	cErrorRAClassifyError	24
public static final int	cErrorREClassifyError	25
public static final int	cErrorUnexpected	13
public static final int	cErrorUnitReactionLimit	27
public static final int	cErrorUnMappedCInConOrFr	14
public static final int	cIndexFullPermutation	2
public static final int	cIndexNone	0
public static final int	cIndexOnePermToFile	1

com.actelion.research.chem.reaction.ReactionEncoder

Modifier and Type	Constant Field	Value
public static final char	CATALYST_DELIMITER	43
public static final int	INCLUDE_ALL	15
public static final int	INCLUDE_CATALYSTS	8
public static final int	INCLUDE_COORDS	2
public static final int	INCLUDE_DEFAULT	3
public static final int	INCLUDE_DRAWING_OBJECTS	4
public static final int	INCLUDE_MAPPING	1
public static final int	INCLUDE_RXN_CODE_ONLY	0
public static final char	MOLECULE_DELIMITER	32
public static final java.lang.String	MOLECULE_DELIMITER_STRING	" "
public static final char	OBJECT_DELIMITER	35
public static final java.lang.String	OBJECT_DELIMITER_STRING	"#"
public static final char	PRODUCT_IDENTIFIER	33
public static final int	RETAIN_REACTANT_AND_PRODUCT_ORDER	16

com.actelion.research.chem.reaction.ReactionSearchDataSource

Modifier and Type	Constant Field	Value
public static final long	SEARCH_TYPE_NOT_SUPPORTED	-1L

com.actelion.research.chem.reaction.ReactionSearchSpecification

Modifier and Type	Constant Field	Value
public static final int	TYPE_EXACT_NO_STEREO	5
public static final int	TYPE_EXACT_STRICT	4
public static final int	TYPE_NO_REACTION	0
public static final int	TYPE_RETRON	3
public static final int	TYPE_SIMILARITY	2
public static final int	TYPE_SUBREACTION	1

com.actelion.research.chem.reaction.Reactor

Modifier and Type	Constant Field	Value
public static final int	MODE_ALLOW_CHARGE_CORRECTIONS	8
public static final int	MODE_FULLY_MAP_REACTIONS	2
public static final int	MODE_REMOVE_DUPLICATE_PRODUCTS	4
public static final int	MODE_RETAIN_COORDINATES	1

com.actelion.research.chem.shredder.Fragment

Modifier and Type	Constant Field	Value
public static final java.lang.String	TAG_FREQUENCY	"FrequencySumAll"
public static final java.lang.String	TAG_FREQUENCY_ONE_PER_MOLECULE	"FrequencyOnePerMolecule"
public static final java.lang.String	TAG_RELATIVE_FREQUNCY	"Relative frequencySumAll"
public static final java.lang.String	TAG_SIZE	"Size fragment"

com.actelion.research.gui.CompoundCollectionPane<T>

Modifier and Type	Constant Field	Value
public static final int	FILE_SUPPORT_NONE	0
public static final int	FILE_SUPPORT_OPEN_AND_SAVE_FILES	3
public static final int	FILE_SUPPORT_OPEN_FILES	1
public static final int	FILE_SUPPORT_SAVE_FILES	2

com.actelion.research.gui.DrawAreaEvent

Modifier and Type	Constant Field	Value
public static final int	TYPE_HILITE_ATOM_CHANGED	3
public static final int	TYPE_HILITE_BOND_CHANGED	4
public static final int	TYPE_MOLECULE_CHANGED	1
public static final int	TYPE_SELECTION_CHANGED	2

com.actelion.research.gui.JAtomLabelDialog

Modifier and Type	Constant Field	Value
public static final long	serialVersionUID	537395731L

com.actelion.research.gui.JChemistryView

Modifier and Type	Constant Field	Value
public static final int	PASTE_AND_DROP_OPTION_ALLOW_FRAGMENT_STATE_CHANGE	1
public static final int	PASTE_AND_DROP_OPTION_KEEP_ATOM_COLORS	2
public static final int	PASTE_AND_DROP_OPTION_KEEP_BOND_HIGHLIGHTING	4
public static final int	PASTE_AND_DROP_OPTION_LAYOUT_REACTION	32
public static final int	PASTE_AND_DROP_OPTION_REMOVE_CATALYSTS	8
public static final int	PASTE_AND_DROP_OPTION_REMOVE_DRAWING_OBJECTS	16

com.actelion.research.gui.JDrawArea

Modifier and Type	Constant Field	Value
public static final int	FAKE_ATOM_NO	100
public static final int	MODE_DRAWING_OBJECTS	8
public static final int	MODE_MARKUSH_STRUCTURE	2
public static final int	MODE_MULTIPLE_FRAGMENTS	1
public static final int	MODE_REACTION	4
protected static final int	UPDATE_CHECK_COORDS	3
protected static final int	UPDATE_CHECK_VIEW	2
protected static final int	UPDATE_INVENT_COORDS	6
protected static final int	UPDATE_NONE	0
protected static final int	UPDATE_REDRAW	1
protected static final int	UPDATE_SCALE_COORDS	4
protected static final int	UPDATE_SCALE_COORDS_USE_FRAGMENTS	5

com.actelion.research.gui.JDrawToolbar

Modifier and Type	Constant Field	Value
protected static final int	cButtonCleanStructure	1
protected static final int	cButtonClear	0
protected static final int	cButtonsPerColumn	17
protected static final int	cButtonUndo	17
protected static final int	cTool3Ring	7
protected static final int	cTool4Ring	24
protected static final int	cTool5Ring	8
protected static final int	cTool6Ring	25
protected static final int	cTool7Ring	9
protected static final int	cToolAromRing	26
protected static final int	cToolAtomBr	15
protected static final int	cToolAtomC	11
protected static final int	cToolAtomCl	31
protected static final int	cToolAtomF	14
protected static final int	cToolAtomH	16
protected static final int	cToolAtomI	32
protected static final int	cToolAtomN	12
protected static final int	cToolAtomO	13
protected static final int	cToolAtomOther	33
protected static final int	cToolAtomP	29
protected static final int	cToolAtomS	30
protected static final int	cToolAtomSi	28
protected static final int	cToolChain	22
protected static final int	cToolDelete	4
protected static final int	cToolDownBond	23
protected static final int	cToolESR	20
protected static final int	cToolESRAbs	101
protected static final int	cToolESRAnd	103
protected static final int	cToolESROr	102
public static final int	cToolLassoPointer	2
protected static final int	cToolMapper	19
protected static final int	cToolNegCharge	27
protected static final int	cToolPosCharge	10
protected static final int	cToolStdBond	5
protected static final int	cToolText	21
protected static final int	cToolUnknownParity	3
protected static final int	cToolUpBond	6
protected static final int	cToolZoom	18

com.actelion.research.gui.JImagePanel

Modifier and Type	Constant Field	Value
public static final java.lang.String	cDefaultImageExtension	".jpg"
public static final java.lang.String	cThumbNailExtension	"_s"

com.actelion.research.gui.JLoginDialog

Modifier and Type	Constant Field	Value
public static final java.lang.String	cLoginCancel	"loginCancel"
public static final java.lang.String	cLoginOK	"loginOK"
public static final java.lang.String	PREFERENCES_KEY_USERID	"databaseUserID"

com.actelion.research.gui.JMultiPanelView

Modifier and Type	Constant Field	Value
public static final java.lang.String	VIEW_HEIGHT	"height"

com.actelion.research.gui.PruningBarEvent

Modifier and Type	Constant Field	Value
public static final int	TYPE_DRAGGED	1
public static final int	TYPE_TYPED	2

com.actelion.research.gui.VerticalFlowLayout

Modifier and Type	Constant Field	Value
public static final int	BOTTOM	2
public static final int	CENTER	1
public static final int	LEFT	3
public static final int	RIGHT	4
public static final int	TOP	0

com.actelion.research.gui.clipboard.NativeClipboardAccessor

Modifier and Type	Constant Field	Value
public static final java.lang.String	NC_ALDUSMETAFILE	"ALDUS_METAFILE"
public static final java.lang.String	NC_BITMAP	"CF_BITMAP"
public static final java.lang.String	NC_CHEMDRAWINTERCHANGE	"ChemDraw Interchange Format"
public static final java.lang.String	NC_CTAB	"MDLCT"
public static final java.lang.String	NC_DIB	"CF_DIB"
public static final java.lang.String	NC_EMBEDDEDSKETCH	"MDLSK_EMBEDDED"
public static final java.lang.String	NC_IDCODE	"IDCODE"
public static final java.lang.String	NC_METAFILE	"CF_METAFILEPICT"
public static final java.lang.String	NC_MOLFILE	"MDL_MOL"
public static final java.lang.String	NC_SERIALIZEMOLECULE	"ACT_MOLECULE"
public static final java.lang.String	NC_SERIALIZEREACTION	"ACT_REACTION"
public static final java.lang.String	NC_SKETCH	"MDLSK"

com.actelion.research.gui.clipboard.external.ChemDrawCDX

Modifier and Type	Constant Field	Value
public static final int	kCDXObj_Bond	32773
public static final int	kCDXObj_Fragment	32771
public static final int	kCDXObj_Group	32770
public static final int	kCDXObj_Node	32772
public static final int	kCDXObj_Page	32769

com.actelion.research.gui.dnd.MoleculeDropAdapter

Modifier and Type	Constant Field	Value
public static final boolean	debug	false

com.actelion.research.gui.dnd.ReactionDropAdapter

Modifier and Type	Constant Field	Value
public static final boolean	debug	false

com.actelion.research.gui.dock.JDockingPanel

Modifier and Type	Constant Field	Value
public static final int	DOCK_BOTTOM	3
public static final int	DOCK_CENTER	0
public static final int	DOCK_LEFT	2
public static final int	DOCK_RIGHT	4
public static final int	DOCK_TOP	1

com.actelion.research.gui.hidpi.ColorUtils

Modifier and Type	Constant Field	Value
public static final java.lang.String	BLACK	"#000000"

com.actelion.research.gui.wmf.WMF

Modifier and Type	Constant Field	Value
public static final int	MFCOMMENT	15

com.actelion.research.gui.wmf.WMFConstants

Modifier and Type	Constant Field	Value
public static final int	ALTERNATE	1
public static final byte	ANSI_CHARSET	0
public static final int	BLACKNESS	66
public static final int	BS_DIBPATTERN	5
public static final int	BS_HATCHED	2
public static final int	BS_HOLLOW	1
public static final int	BS_NULL	1
public static final int	BS_PATTERN	3
public static final int	BS_SOLID	0
public static final byte	CLIP_CHARACTER_PRECIS	1
public static final byte	CLIP_DEFAULT_PRECIS	0
public static final byte	CLIP_LH_ANGLES	16
public static final byte	CLIP_MASK	15
public static final byte	CLIP_STROKE_PRECIS	2
public static final byte	CLIP_TT_ALWAYS	32
public static final byte	DEFAULT_CHARSET	1
public static final byte	DEFAULT_PITCH	0
public static final byte	DEFAULT_QUALITY	0
public static final int	DIB_PAL_COLORS	1
public static final int	DIB_RGB_COLORS	0
public static final byte	DRAFT_QUALITY	1
public static final int	DSTINVERT	5570569
public static final int	ETO_CLIPPED	4
public static final int	ETO_GRAYED	1
public static final int	ETO_OPAQUE	2
public static final byte	FF_DECORATIVE	80
public static final byte	FF_DONTCARE	0
public static final byte	FF_MODERN	48
public static final byte	FF_ROMAN	16
public static final byte	FF_SCRIPT	64
public static final byte	FF_SWISS	32
public static final byte	FIXED_PITCH	1
public static final int	FW_BLACK	900
public static final int	FW_BOLD	700
public static final int	FW_DONTCARE	100
public static final int	FW_NORMAL	400
public static final int	FW_THIN	100
public static final int	HS_BDIAGONAL	3
public static final int	HS_CROSS	4
public static final int	HS_DIAGCROSS	5
public static final int	HS_FDIAGONAL	2
public static final int	HS_HORIZONTAL	0
public static final int	HS_VERTICAL	1
public static final int	MERGEPAINT	12255782
public static final int	META_ALDUS_APM	-1698247209
public static final int	META_ANIMATEPALETTE	1078
public static final int	META_ARC	2071
public static final int	META_BITBLT	2338
public static final int	META_CHORD	2096
public static final int	META_CREATEBITMAP	1790
public static final int	META_CREATEBITMAPINDIRECT	765
public static final int	META_CREATEBRUSH	248
public static final int	META_CREATEBRUSHINDIRECT	764
public static final int	META_CREATEFONTINDIRECT	763
public static final int	META_CREATEPALETTE	247
public static final int	META_CREATEPATTERNBRUSH	505
public static final int	META_CREATEPENINDIRECT	762
public static final int	META_CREATEREGION	1791
public static final int	META_DELETEOBJECT	496
public static final int	META_DIBBITBLT	2368
public static final int	META_DIBCREATEPATTERNBRUSH	322
public static final int	META_DIBSTRETCHBLT	2881
public static final int	META_DRAWTEXT	1583
public static final int	META_ELLIPSE	1048
public static final int	META_ESCAPE	1574
public static final int	META_EXCLUDECLIPRECT	1045
public static final int	META_EXTFLOODFILL	1352
public static final int	META_EXTTEXTOUT	2610
public static final int	META_FILLREGION	552
public static final int	META_FLOODFILL	1049
public static final int	META_FRAMEREGION	1065
public static final int	META_INTERSECTCLIPRECT	1046
public static final int	META_INVERTREGION	298
public static final int	META_LINETO	531
public static final int	META_MOVETO	532
public static final int	META_OBJ_ANSI_FIXED_FONT	11
public static final int	META_OBJ_ANSI_VAR_FONT	12
public static final int	META_OBJ_BLACK_BRUSH	4
public static final int	META_OBJ_BLACK_PEN	7
public static final int	META_OBJ_DEFAULT_PALETTE	15
public static final int	META_OBJ_DEVICE_DEFAULT_FONT	14
public static final int	META_OBJ_DKGRAY_BRUSH	3
public static final int	META_OBJ_GRAY_BRUSH	2
public static final int	META_OBJ_HOLLOW_BRUSH	5
public static final int	META_OBJ_LTGRAY_BRUSH	1
public static final int	META_OBJ_NULL_BRUSH	5
public static final int	META_OBJ_NULL_PEN	8
public static final int	META_OBJ_OEM_FIXED_FONT	10
public static final int	META_OBJ_SYSTEM_FIXED_FONT	16
public static final int	META_OBJ_SYSTEM_FONT	13
public static final int	META_OBJ_WHITE_BRUSH	0
public static final int	META_OBJ_WHITE_PEN	6
public static final int	META_OFFSETCLIPRGN	544
public static final int	META_OFFSETVIEWPORTORG	529
public static final int	META_OFFSETWINDOWORG	527
public static final int	META_PAINTREGION	299
public static final int	META_PATBLT	1565
public static final int	META_PIE	2074
public static final int	META_POLYBEZIER16	4096
public static final int	META_POLYGON	804
public static final int	META_POLYLINE	805
public static final int	META_POLYPOLYGON	1336
public static final int	META_REALIZEPALETTE	53
public static final int	META_RECTANGLE	1051
public static final int	META_RESIZEPALETTE	313
public static final int	META_RESTOREDC	295
public static final int	META_ROUNDRECT	1564
public static final int	META_SAVEDC	30
public static final int	META_SCALEVIEWPORTEXT	1042
public static final int	META_SCALEWINDOWEXT	1040
public static final int	META_SELECTCLIPREGION	300
public static final int	META_SELECTOBJECT	301
public static final int	META_SELECTPALETTE	564
public static final int	META_SETBKCOLOR	513
public static final int	META_SETBKMODE	258
public static final int	META_SETDIBTODEV	3379
public static final int	META_SETMAPMODE	259
public static final int	META_SETMAPPERFLAGS	561
public static final int	META_SETPALENTRIES	55
public static final int	META_SETPIXEL	1055
public static final int	META_SETPOLYFILLMODE	262
public static final int	META_SETRELABS	261
public static final int	META_SETROP2	260
public static final int	META_SETSTRETCHBLTMODE	263
public static final int	META_SETTEXTALIGN	302
public static final int	META_SETTEXTCHAREXTRA	264
public static final int	META_SETTEXTCOLOR	521
public static final int	META_SETTEXTJUSTIFICATION	522
public static final int	META_SETVIEWPORTEXT	526
public static final int	META_SETVIEWPORTORG	525
public static final int	META_SETWINDOWEXT	524
public static final int	META_SETWINDOWORG	523
public static final int	META_STRETCHBLT	2851
public static final int	META_STRETCHDIB	3907
public static final int	META_TEXTOUT	1313
public static final int	MFCOMMENT	15
public static final int	MM_ANISOTROPIC	8
public static final int	MM_HIENGLISH	5
public static final int	MM_HIMETRIC	3
public static final int	MM_HITWIPS	6
public static final int	MM_ISOTROPIC	7
public static final int	MM_LOENGLISH	4
public static final int	MM_LOMETRIC	2
public static final int	MM_TEXT	1
public static final int	NOTSRCCOPY	3342344
public static final int	NOTSRCERASE	1114278
public static final byte	OEM_CHARSET	-1
public static final int	OPAQUE	2
public static final byte	OUT_CHARACTER_PRECIS	2
public static final byte	OUT_DEFAULT_PRECIS	0
public static final byte	OUT_DEVICE_PRECIS	5
public static final byte	OUT_RASTER_PRECIS	6
public static final byte	OUT_STRING_PRECIS	1
public static final byte	OUT_STROKE_PRECIS	3
public static final byte	OUT_TT_PRECIS	4
public static final int	PATCOPY	15728673
public static final int	PATINVERT	5898313
public static final int	PATPAINT	16452105
public static final byte	PROOF_QUALITY	2
public static final int	PS_DASH	1
public static final int	PS_DASHDOT	3
public static final int	PS_DASHDOTDOT	4
public static final int	PS_DOT	2
public static final int	PS_INSIDEFRAME	6
public static final int	PS_NULL	5
public static final int	PS_SOLID	0
public static final int	R2_BLACK	1
public static final int	R2_COPYPEN	13
public static final int	R2_MASKNOTPENNOT	3
public static final int	R2_MASKPEN	9
public static final int	R2_MASKPENNOT	5
public static final int	R2_MERGENOTPEN	12
public static final int	R2_MERGEPEN	15
public static final int	R2_MERGEPENNOT	14
public static final int	R2_NOP	11
public static final int	R2_NOT	6
public static final int	R2_NOTCOPYPEN	4
public static final int	R2_NOTMASKPEN	8
public static final int	R2_NOTMERGEPEN	2
public static final int	R2_NOTXORPEN	10
public static final int	R2_WHITE	16
public static final int	R2_XORPEN	7
public static final byte	SHIFTJIS_CHARSET	-128
public static final int	SRCAND	8913094
public static final int	SRCCOPY	13369376
public static final int	SRCERASE	4457256
public static final int	SRCINVERT	6684742
public static final int	SRCPAINT	15597702
public static final int	STRETCH_ANDSCANS	1
public static final int	STRETCH_DELETESCANS	3
public static final int	STRETCH_ORSCANS	2
public static final byte	SYMBOL_CHARSET	2
public static final int	TA_BASELINE	24
public static final int	TA_BOTTOM	8
public static final int	TA_CENTER	6
public static final int	TA_LEFT	0
public static final int	TA_NOUPDATECP	0
public static final int	TA_RIGHT	2
public static final int	TA_TOP	0
public static final int	TA_UPDATECP	1
public static final int	TRANSPARENT	1
public static final byte	VARIABLE_PITCH	2
public static final int	WHITENESS	16711778
public static final int	WINDING	2

com.actelion.research.gui.wmf.WMFGraphics

Modifier and Type	Constant Field	Value
public static final int	MM_ANISOTROPIC	8
public static final int	SRC_AND	8913094
public static final int	SRC_COPY	13369376
public static final int	SRC_PAINT	15597702

com.actelion.research.jfx.gui.chem.MoleculeViewSkin

Modifier and Type	Constant Field	Value
public static final int	DEFAULT_IMAGE_HEIGHT	200
public static final int	DEFAULT_IMAGE_WIDTH	200

com.actelion.research.share.gui.editor.Model

Modifier and Type	Constant Field	Value
public static final int	FAKE_ATOM_NO	100
public static final int	KEY_IS_ATOM_LABEL	1
public static final int	KEY_IS_INVALID	4
public static final int	KEY_IS_SUBSTITUENT	2
public static final int	KEY_IS_VALID_START	3
public static final int	MAX_CONNATOMS	8
public static final int	MAX_UNDO_SIZE	5
public static final int	MIN_BOND_LENGTH_SQUARE	100
public static final int	MODE_DRAWING_OBJECTS	8
public static final int	MODE_MARKUSH_STRUCTURE	2
public static final int	MODE_MULTIPLE_FRAGMENTS	1
public static final int	MODE_REACTION	4

com.actelion.research.share.gui.editor.actions.DrawAction

Modifier and Type	Constant Field	Value
public static final double	HIGHLIGHT_ATOM_RADIUS	5.0
public static final int	KEYSTROKEFONTSIZE	24
public static final int	MAX_CONNATOMS	8
public static final java.lang.String	UNKNOWN	"<unknown>"

com.actelion.research.share.gui.editor.geom.IColor

Modifier and Type	Constant Field	Value
public static final long	BLACK	255L
public static final long	BLUE	65535L
public static final long	GRAY	2863311615L
public static final long	GREEN	16711935L
public static final long	RED	68451041535L
public static final long	TRANSPARENT	0L
public static final long	WHITE	4294967295L

com.actelion.research.share.gui.editor.geom.ICursor

Modifier and Type	Constant Field	Value
public static final int	CROSSHAIR	1
public static final int	DEFAULT	0
public static final int	MAX_DEFAULT_CURSOR	13
public static final int	SE_RESIZE	4
public static final int	TOOL_CHAINCURSOR	45
public static final int	TOOL_CTEXTCURSOR	2
public static final int	TOOL_CURSOR_BASE	45
public static final int	TOOL_DELETECURSOR	46
public static final int	TOOL_FISTCURSOR	49
public static final int	TOOL_HANDCURSOR	47
public static final int	TOOL_HANDPLUSCURSOR	48
public static final int	TOOL_LASSOCURSOR	50
public static final int	TOOL_LASSOPLUSCURSOR	51
public static final int	TOOL_POINTERCURSOR	0
public static final int	TOOL_SELECTRECTCURSOR	52
public static final int	TOOL_SELECTRECTPLUSCURSOR	53
public static final int	TOOL_ZOOMCURSOR	54

com.actelion.research.util.Angle

Modifier and Type	Constant Field	Value
public final double	TWO_PI	6.283185307179586

com.actelion.research.util.AnimatedGIFWriter

Modifier and Type	Constant Field	Value
public static final byte	APPLICATION_EXTENSION_LABEL	-1
public static final byte	COMMENT_EXTENSION_LABEL	-2
public static final byte	EXTENSION_INTRODUCER	33
public static final byte	GRAPHIC_CONTROL_LABEL	-7
public static final byte	IMAGE_SEPARATOR	44
public static final byte	IMAGE_TRAILER	59
public static final byte	TEXT_EXTENSION_LABEL	1

com.actelion.research.util.AnimatedGIFWriter.GIFFrame

Modifier and Type	Constant Field	Value
public static final int	DISPOSAL_LEAVE_AS_IS	1
public static final int	DISPOSAL_RESTORE_TO_BACKGROUND	2
public static final int	DISPOSAL_RESTORE_TO_PREVIOUS	3
public static final int	DISPOSAL_TO_BE_DEFINED	7
public static final int	DISPOSAL_UNSPECIFIED	0
public static final int	TRANSPARENCY_COLOR_NONE	-1
public static final int	TRANSPARENCY_INDEX_NONE	0
public static final int	TRANSPARENCY_INDEX_SET	1
public static final int	USER_INPUT_EXPECTED	1
public static final int	USER_INPUT_NONE	0

com.actelion.research.util.Base64

Modifier and Type	Constant Field	Value
public static final int	DECODE	0
public static final int	DO_BREAK_LINES	8
public static final int	DONT_GUNZIP	4
public static final int	ENCODE	1
public static final int	GZIP	2
public static final int	NO_OPTIONS	0
public static final int	ORDERED	32
public static final int	URL_SAFE	16

com.actelion.research.util.BitUtils

Modifier and Type	Constant Field	Value
public static final long	MASK_FIRST_SHORT	65535L
public static final long	MASK_FOURTH_SHORT	-281474976710656L
public static final long	MASK_SEC_SHORT	4294901760L
public static final long	MASK_THIRD_SHORT	281470681743360L

com.actelion.research.util.CommandLineParser

Modifier and Type	Constant Field	Value
public static final java.lang.String	HELP	"-h"

com.actelion.research.util.ConstantsDWAR

Modifier and Type	Constant Field	Value
public static final int	ATOM_LABEL_R1	142
public static final int	ATOM_LABEL_R2	143
public static final int	ATOM_LABEL_R3	144
public static final java.lang.String	ATTR_NO	"N"
public static final java.lang.String	ATTR_YES	"Y"
public static final java.lang.String	CHARSET_ENCODING	"UTF8"
public static final java.lang.String	DWAQ_EXTENSION	".dwaq"
public static final java.lang.String	DWAR_EXTENSION	".dwar"
public static final java.lang.String	ODE_EXTENSION	".ode"
public static final java.lang.String	PACKAGE_DATAWARRIOR_IDORSIA	"com.actelion.research.datawarrior.DataWarriorActelionLinux"
public static final java.lang.String	PATTERN_NF_DWAR	"0.000############"
public static final java.lang.String	PATTERN_NF_DWAR4	"0.0000"
public static final java.lang.String	PLATFORM_NAME_DATAWARRIOR	"datawarrior"
public static final java.lang.String	REGEX_FILE_EXTENSION	"(.*\\.ode)|(.*\\.dwar)"
public static final java.lang.String	SDF_EXTENSION	".sdf"
public static final java.lang.String	SEP_LINE	"<NL>"
public static final java.lang.String	SEP_VALUE	"; "
public static final java.lang.String	TAG_ACTNO	"Idorsia No"
public static final java.lang.String	TAG_ATOMS	"Atoms"
public static final java.lang.String	TAG_BONDS	"Bonds"
public static final java.lang.String	TAG_CONFORMERSET	"conformerSet"
public static final java.lang.String	TAG_COOR	"idcoordinates"
public static final java.lang.String	TAG_COOR2	"idcoordinates2D"
public static final java.lang.String	TAG_COOR3D	"idcoordinates3D"
public static final java.lang.String	TAG_ID_QUERY	"Id Query"
public static final java.lang.String	TAG_IDCODE	"idcode"
public static final java.lang.String	TAG_IDCODE2	"Structure"
public static final java.lang.String	TAG_LIGAND_EFFICIENCY	"LE"
public static final java.lang.String	TAG_MW	"Total Molweight"
public static final java.lang.String	TAG_NAME	"Name"
public static final java.lang.String	TAG_QUERY_IDENTIFIER	"QueryIdentifier"
public static final java.lang.String	TAG_REACTION_CODE	"ReactionCode"
public static final java.lang.String	TAG_REACTION_COORD	"ReactionCoordinates"
public static final java.lang.String	TAG_REACTION_DRAW_OBJ	"ReactionDrawingObjects"
public static final java.lang.String	TAG_REACTION_MAPPING	"ReactionMapping"
public static final java.lang.String	TAG_RECORD_NO	"Record No"
public static final java.lang.String	TAG_SOURCE	"Source"
public static final java.lang.String	TAG_STRUCTURE_EXCLUDE	"Exclude"
public static final java.lang.String	TAG_STRUCTURE_INCLUDE	"Include"

com.actelion.research.util.CursorHelper

Modifier and Type	Constant Field	Value
public static final int	cChainCursor	0
public static final int	cDeleteCursor	1
public static final int	cFistCursor	4
public static final int	cHandCursor	2
public static final int	cHandPlusCursor	3
public static final int	cInvisibleCursor	10
public static final int	cLassoCursor	5
public static final int	cLassoPlusCursor	6
public static final int	cPointedHandCursor	13
public static final int	cPointerCursor	11
public static final int	cSelectRectCursor	7
public static final int	cSelectRectPlusCursor	8
public static final int	cTextCursor	12
public static final int	cZoomCursor	9

com.actelion.research.util.DoubleVec

Modifier and Type	Constant Field	Value
public static final int	COSINE	1
public static final int	EUCLIDEAN	2
public static final int	EUCLIDEAN_FAST	3
public static final int	TANIMOTO	4
public static final int	TANIMOTO_INV	5

com.actelion.research.util.Sketch

Modifier and Type	Constant Field	Value
public static final byte	$3D_atom_query	77
public static final byte	$3D_basis_objs	68
public static final byte	$3D_dihed_chiral	74
public static final byte	$3D_exclus_dradius	-22
public static final byte	$3D_exclus_ignore	83
public static final byte	$3D_exclus_radius	75
public static final byte	$3D_marker_rf	-29
public static final byte	$3D_maxval	71
public static final byte	$3D_minval	70
public static final byte	$3D_name	69
public static final byte	$3D_num_basis_objs	67
public static final byte	$3D_point_ddist	-20
public static final byte	$3D_point_dir	76
public static final byte	$3D_point_dist	73
public static final byte	$3D_tolerance	72
public static final byte	$Abbrev_atch	60
public static final byte	$Arc_endpts	16
public static final byte	$ArrowDir	56
public static final byte	$ArrowShaftSp	-26
public static final byte	$ArrowSize	-27
public static final byte	$ArrowStyle	57
public static final byte	$ArrowType	-36
public static final byte	$Atom_aamap_num	96
public static final byte	$Atom_aamapped	63
public static final byte	$Atom_alias	25
public static final byte	$Atom_AttachLen	-32
public static final byte	$Atom_can_reverse	-21
public static final byte	$Atom_chg	27
public static final byte	$Atom_coords	22
public static final byte	$Atom_dispflags	37
public static final byte	$Atom_DotWidth	-31
public static final byte	$Atom_exact_change	79
public static final byte	$Atom_fixed	66
public static final byte	$Atom_h0bit	34
public static final byte	$Atom_hpos	38
public static final byte	$Atom_hshow	98
public static final byte	$Atom_list	24
public static final byte	$Atom_margin_width	-48
public static final byte	$Atom_msdif	29
public static final byte	$Atom_npos	62
public static final byte	$Atom_number	26
public static final byte	$Atom_NumSize	-23
public static final byte	$Atom_Orig_coords	-33
public static final byte	$Atom_rad	28
public static final byte	$Atom_rbcount	31
public static final byte	$Atom_rgroupAtch	53
public static final byte	$Atom_rxn_stereo	80
public static final byte	$Atom_stereo_care	33
public static final byte	$Atom_substcount	32
public static final byte	$Atom_symbol	-24
public static final byte	$Atom_tplatchpt	91
public static final byte	$Atom_type	23
public static final byte	$Atom_unsat	35
public static final byte	$Atom_valence	30
public static final byte	$Atom_value	36
public static final byte	$Atom_zcoord	78
public static final byte	$Begsketch	19
public static final byte	$BigMetaData	85
public static final byte	$Bond_alt_stereo	82
public static final byte	$Bond_atoms	39
public static final byte	$Bond_bond_spacing	-49
public static final byte	$Bond_crossed	81
public static final byte	$Bond_dbl_side	46
public static final byte	$Bond_dbl_width	47
public static final byte	$Bond_hash_spacing	-50
public static final byte	$Bond_qtopo	43
public static final byte	$Bond_rxn_center	44
public static final byte	$Bond_stereo_care	45
public static final byte	$Bond_stereo_type	41
public static final byte	$Bond_topo	42
public static final byte	$Bond_type	40
public static final byte	$Circ_Arc_Points	-51
public static final byte	$Comment	65
public static final byte	$Crop_coords	14
public static final byte	$Endsketch	20
public static final byte	$Fill_color	10
public static final byte	$Fill_RGB2Color	89
public static final byte	$Fill_style	9
public static final byte	$Font	11
public static final byte	$Is_A_Model	92
public static final byte	$Locked	4
public static final byte	$MDLEditText	21
public static final byte	$MetaData	58
public static final byte	$Model_Rotated	-28
public static final byte	$Mol_type	59
public static final byte	$Name	64
public static final byte	$Nostruct_label	-53
public static final byte	$Nostruct_regno	-52
public static final byte	$Obj	3
public static final byte	$Obj_Atom	33
public static final byte	$Obj_Bond	32
public static final byte	$Obj_Chiral	19
public static final byte	$Obj_coords	13
public static final byte	$Obj_Mol	12
public static final byte	$Parent	12
public static final byte	$Pen_color	7
public static final byte	$Pen_RGB2Color	88
public static final byte	$Pen_style	6
public static final byte	$Pen_style_token	84
public static final byte	$Pen_width	5
public static final byte	$Pen_widthUnit	-25
public static final byte	$Poly_points	17
public static final byte	$Poly_smoothed	18
public static final byte	$RGroupNo	49
public static final byte	$RLogic	50
public static final byte	$Roundrect_curve	15
public static final byte	$RxnAtch	48
public static final byte	$SGroupAtch	51
public static final byte	$SGroupAtchPt	61
public static final byte	$SGroupBracketLen	-30
public static final byte	$SGroupContext	-54
public static final byte	$SGroupLinkVal	55
public static final byte	$SGroupName	52
public static final byte	$SGroupNewAtch	-92
public static final byte	$SGroupType	54
public static final byte	$Totobjs	2
public static final byte	$Transparent	8
public static final byte	$Version	1
public static final int	MAXMOLS	12
public static final int	MSDIFF_OFFSET	19
public static final double	PI	3.1415926

com.actelion.research.util.StringFunctions

Modifier and Type	Constant Field	Value
public static final java.lang.String	PAT_NOT_ALPHANUMERIC	"[^\\p{IsAlphabetic}^\\p{IsDigit}]"
public static final java.lang.String	PAT_WHITESPACE	"[\\s\\u0085\\p{Z}]"
public static final java.lang.String	SEP	"; "

com.actelion.research.util.datamodel.ByteVec

Modifier and Type	Constant Field	Value
public static final int	COSINE	1
public static final int	EUCLIDEAN	2
public static final int	EUCLIDEAN_FAST	3
public static final int	TANIMOTO	4
public static final int	TANIMOTO_INV	5

com.actelion.research.util.datamodel.IntVec

Modifier and Type	Constant Field	Value
public static final int	LEN_INTEGER_BYTES	4
public static final int	MASK_FIRST_BYTE	255
public static final int	MASK_FOURTH_BYTE	-16777216
public static final int	MASK_INVERSE_FIRST_BYTE	-256
public static final int	MASK_INVERSE_FOURTH_BYTE	16777215
public static final int	MASK_INVERSE_SEC_BYTE	-65281
public static final int	MASK_INVERSE_THIRD_BYTE	-16711681
public static final int	MASK_SEC_BYTE	65280
public static final int	MASK_THIRD_BYTE	16711680

com.actelion.research.util.graph.complete.CompleteGraphMatcher<T extends ICompleteGraph>

Modifier and Type	Constant Field	Value
public static final boolean	DEBUG	false
public static final byte	DEFAULT_VAL	-1
public static final int	MAX_NUM_NODES	127
public static final int	MAX_NUM_SOLUTIONS	10000
public static final int	MIN_NUM_NODES_SIM	2

org.machinelearning.*

org.machinelearning.svm.libsvm.svm

Modifier and Type	Constant Field	Value
public static final int	LIBSVM_VERSION	323

org.machinelearning.svm.libsvm.svm_parameter

Modifier and Type	Constant Field	Value
public static final int	C_SVC	0
public static final int	EPSILON_SVR	3
public static final int	LINEAR	0
public static final int	NU_SVC	1
public static final int	NU_SVR	4
public static final int	ONE_CLASS	2
public static final int	POLY	1
public static final int	PRECOMPUTED	4
public static final int	RBF	2
public static final int	SIGMOID	3

org.openmolecules.*

org.openmolecules.chem.conf.gen.ConformerGenerator

Modifier and Type	Constant Field	Value
public static final java.lang.String	DW_FRAGMENTS_FILE	"/home/thomas/data/debug/conformationGeneratorFragments.dwar"
public static final boolean	PRINT_DEBUG_INDEXES	false
public static final boolean	PRINT_ELIMINATION_RULES_WITH_STRUCTURES	false
public static final boolean	PRINT_EXIT_REASON	false
public static final boolean	PRINT_TORSION_AND_FRAGMENT_LIKELYHOODS	false
public static final int	STRATEGY_ADAPTIVE_RANDOM	4
public static final int	STRATEGY_LIKELY_RANDOM	3
public static final int	STRATEGY_LIKELY_SYSTEMATIC	1
public static final int	STRATEGY_PURE_RANDOM	2
protected static final double	VDW_TOLERANCE_HYDROGEN	0.8
protected static final double	VDW_TOLERANCE_OTHER	0.8

org.openmolecules.chem.conf.gen.TorsionSetStrategy

Modifier and Type	Constant Field	Value
public static final double	MAX_ALLOWED_COLLISION_INTENSITY	0.7

org.openmolecules.chem.conf.so.ConformationRule

Modifier and Type	Constant Field	Value
public static final int	RULE_TYPE_BINAP	5
public static final int	RULE_TYPE_DISTANCE	0
public static final int	RULE_TYPE_LINE	2
public static final int	RULE_TYPE_PLANE	1
public static final int	RULE_TYPE_STEREO	4
public static final int	RULE_TYPE_TORSION	3

org.slf4j.*

org.slf4j.Logger

Modifier and Type	Constant Field	Value
public static final java.lang.String	ROOT_LOGGER_NAME	"ROOT"

org.slf4j.Marker

Modifier and Type	Constant Field	Value
public static final java.lang.String	ANY_MARKER	"*"
public static final java.lang.String	ANY_NON_NULL_MARKER	"+"

org.slf4j.event.EventConstants

Modifier and Type	Constant Field	Value
public static final int	DEBUG_INT	10
public static final int	ERROR_INT	40
public static final int	INFO_INT	20
public static final java.lang.String	NA_SUBST	"NA/SubstituteLogger"
public static final int	TRACE_INT	0
public static final int	WARN_INT	30

org.slf4j.spi.LocationAwareLogger

Modifier and Type	Constant Field	Value
public static final int	DEBUG_INT	10
public static final int	ERROR_INT	40
public static final int	INFO_INT	20
public static final int	TRACE_INT	0
public static final int	WARN_INT	30

smile.clustering.*

smile.clustering.Clustering<T>

Modifier and Type	Constant Field	Value
public static final int	OUTLIER	2147483647

smile.data.*

smile.data.Dataset<E>

Modifier and Type	Constant Field	Value
protected static final java.lang.String	DATASET_HAS_NO_RESPONSE	"The dataset has no response values."
protected static final java.lang.String	RESPONSE_NOT_NOMINAL	"The response variable is not nominal."
protected static final java.lang.String	RESPONSE_NOT_NUMERIC	"The response variable is not numeric."

smile.math.*

smile.math.Math

Modifier and Type	Constant Field	Value
public static final double	E	2.718281828459045
public static final double	PI	3.141592653589793