Package com.actelion.research.util.graph.complete

Class SolutionCompleteGraph

java.lang.Object

com.actelion.research.util.graph.complete.AMemorizedObject

com.actelion.research.util.graph.complete.SolutionCompleteGraph

All Implemented Interfaces:

java.lang.Comparable<SolutionCompleteGraph>

Direct Known Subclasses:

ModelSolutionSimilarity

public class SolutionCompleteGraph
extends AMemorizedObject
implements java.lang.Comparable<SolutionCompleteGraph>

SolutionCompleteGraph

Copyright: Actelion Ltd., Inc. All Rights Reserved This software is the proprietary information of Actelion Pharmaceuticals, Ltd. Use is subject to license terms.

Version:

1.0 Oct 1, 2012 MvK: Start implementation

Author:

Modest von Korff

Constructor Summary

Constructors

Constructor	Description
SolutionCompleteGraph()

Method Summary

Modifier and Type	Method	Description
void	add(byte indexNodeQuery, byte indexNodeBase)	Adds a pair of nodes to this solution.
int	compareTo(SolutionCompleteGraph s)
void	copyIntoThis(AMemorizedObject a)	Has to be a deep copy
boolean	equals(java.lang.Object obj)
byte	getIndexBaseFromHeap(int indexOnHeapBase)
byte	getIndexCorrespondingBaseNode(int indexQueryNode)
byte	getIndexQueryFromHeap(int indexOnHeapQuery)
int	getNodesQuery()
double	getSimilarity()
int	getSizeHeap()
byte[]	getSolution()	The index is the index of the node in the query molecule.
int	hashCode()
void	reset()
void	setNodesQuery(int nodes)	Only needed for the toString() method.
void	setSimilarity(double similarity)
java.lang.String	toString()

Methods inherited from class com.actelion.research.util.graph.complete.AMemorizedObject

getPositionInContainer, setPositionInContainer

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

SolutionCompleteGraph

public SolutionCompleteGraph()

Method Detail

add

public void add(byte indexNodeQuery,
                byte indexNodeBase)

Adds a pair of nodes to this solution.

Parameters:

indexNodeBase - index of the base node in the complete base graph.

indexNodeQuery - index of the query node in the complete query graph.

compareTo

public int compareTo(SolutionCompleteGraph s)

Specified by:

compareTo in interface java.lang.Comparable<SolutionCompleteGraph>

getSizeHeap

public int getSizeHeap()

getIndexBaseFromHeap

public byte getIndexBaseFromHeap(int indexOnHeapBase)

getIndexQueryFromHeap

public byte getIndexQueryFromHeap(int indexOnHeapQuery)

getIndexCorrespondingBaseNode

public byte getIndexCorrespondingBaseNode(int indexQueryNode)

getSolution

public byte[] getSolution()

The index is the index of the node in the query molecule. The value at 'index' is the index of the node in the base molecule.

equals

public boolean equals(java.lang.Object obj)

Overrides:

equals in class java.lang.Object

copyIntoThis

public void copyIntoThis(AMemorizedObject a)

Description copied from class: AMemorizedObject

Has to be a deep copy

Specified by:

copyIntoThis in class AMemorizedObject

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

reset

public void reset()

Specified by:

reset in class AMemorizedObject

getSimilarity

public double getSimilarity()

setSimilarity

public void setSimilarity(double similarity)

setNodesQuery

public void setNodesQuery(int nodes)

Only needed for the toString() method.

Parameters:

nodes -

getNodesQuery

public int getNodesQuery()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object