Package com.actelion.research.share.gui.editor.chem

Class AbstractExtendedDepictor<T,C>

java.lang.Object

com.actelion.research.share.gui.editor.chem.AbstractExtendedDepictor<T,C>

public abstract class AbstractExtendedDepictor<T,C>
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field	Description
protected AbstractDepictor[]	mDepictor
protected int	mDisplayMode
protected boolean	mDoLayoutMolecules
protected java.util.List<IDrawingObject>	mDrawingObjectList
protected C	mFragmentNoColor
protected boolean	mIsMarkushStructure
protected StereoMolecule[]	mMolecule
protected int	mReactantOrCoreCount
protected DepictorTransformation	mTransformation
protected boolean	mUseGraphics2D

Constructor Summary

Constructors

Constructor	Description
AbstractExtendedDepictor(Reaction reaction, java.util.List<IDrawingObject> drawingObjectList, boolean layoutReaction, boolean useGraphics2D, DrawConfig cfg)
AbstractExtendedDepictor(StereoMolecule[] mol, int markushCoreCount, java.util.List<IDrawingObject> drawingObjectList, boolean useGraphics2D, DrawConfig cfg)	Use this constructor for markush structures.
AbstractExtendedDepictor(StereoMolecule[] mol, java.util.List<IDrawingObject> drawingObjectList, boolean useGraphics2D, DrawConfig cfg)
AbstractExtendedDepictor(StereoMolecule mol, java.util.List<IDrawingObject> drawingObjectList, boolean useGraphics2D, DrawConfig cfg)

Method Summary

Modifier and Type	Method	Description
protected double	calculateAverageBondLength()
abstract AbstractDepictor	createDepictor(StereoMolecule stereoMolecule, boolean mUseGraphics2D, DrawConfig cfg)
ExtendedMolecule	getMolecule(int i)
int	getMoleculeCount()
AbstractDepictor	getMoleculeDepictor(int i)
DepictorTransformation	getmTransformation()
void	paint(T g)
protected abstract void	paintDrawingObjects(T g)
protected abstract void	paintFragmentNumbers(T g)
protected abstract void	paintStructures(T g)
void	setDisplayMode(int displayMode)
void	setForegroundColor(java.awt.Color foreGround, java.awt.Color background)
void	setFragmentNoColor(C c)
void	setOverruleColor(java.awt.Color foreGround, java.awt.Color background)
DepictorTransformation	updateCoords(T g, java.awt.geom.Rectangle2D.Double viewRect, int mode)
DepictorTransformation	validateView(T g, java.awt.geom.Rectangle2D.Double viewRect, int mode)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

mMolecule

protected StereoMolecule[] mMolecule

mDepictor

protected AbstractDepictor[] mDepictor

mDrawingObjectList

protected java.util.List<IDrawingObject> mDrawingObjectList

mDisplayMode

protected int mDisplayMode

mReactantOrCoreCount

protected int mReactantOrCoreCount

mUseGraphics2D

protected boolean mUseGraphics2D

mDoLayoutMolecules

protected boolean mDoLayoutMolecules

mIsMarkushStructure

protected boolean mIsMarkushStructure

mTransformation

protected DepictorTransformation mTransformation

mFragmentNoColor

protected C mFragmentNoColor

Constructor Detail

AbstractExtendedDepictor

public AbstractExtendedDepictor(StereoMolecule mol,
                                java.util.List<IDrawingObject> drawingObjectList,
                                boolean useGraphics2D,
                                DrawConfig cfg)

AbstractExtendedDepictor

public AbstractExtendedDepictor(StereoMolecule[] mol,
                                java.util.List<IDrawingObject> drawingObjectList,
                                boolean useGraphics2D,
                                DrawConfig cfg)

AbstractExtendedDepictor

public AbstractExtendedDepictor(StereoMolecule[] mol,
                                int markushCoreCount,
                                java.util.List<IDrawingObject> drawingObjectList,
                                boolean useGraphics2D,
                                DrawConfig cfg)

Use this constructor for markush structures. The first fragments in the list are the Markush core structures (typically only one), decorated with R1,R2,R3,... The remaining fragments need to contain one atom with atomicNo=0 each, that indicates the attachment point. They also may contain Rn atoms. Any of the fragments may contain query features.

Parameters:

mol -

markushCoreCount -

drawingObjectList -

useGraphics2D -

AbstractExtendedDepictor

public AbstractExtendedDepictor(Reaction reaction,
                                java.util.List<IDrawingObject> drawingObjectList,
                                boolean layoutReaction,
                                boolean useGraphics2D,
                                DrawConfig cfg)

Method Detail

createDepictor

public abstract AbstractDepictor createDepictor(StereoMolecule stereoMolecule,
                                                boolean mUseGraphics2D,
                                                DrawConfig cfg)

paintFragmentNumbers

protected abstract void paintFragmentNumbers(T g)

paintStructures

protected abstract void paintStructures(T g)

paintDrawingObjects

protected abstract void paintDrawingObjects(T g)

setDisplayMode

public void setDisplayMode(int displayMode)

setFragmentNoColor

public void setFragmentNoColor(C c)

getMoleculeCount

public int getMoleculeCount()

getMolecule

public ExtendedMolecule getMolecule(int i)

getMoleculeDepictor

public AbstractDepictor getMoleculeDepictor(int i)

setOverruleColor

public void setOverruleColor(java.awt.Color foreGround,
                             java.awt.Color background)

setForegroundColor

public void setForegroundColor(java.awt.Color foreGround,
                               java.awt.Color background)

paint

public void paint(T g)

updateCoords

public DepictorTransformation updateCoords(T g,
                                           java.awt.geom.Rectangle2D.Double viewRect,
                                           int mode)

validateView

public DepictorTransformation validateView(T g,
                                           java.awt.geom.Rectangle2D.Double viewRect,
                                           int mode)

calculateAverageBondLength

protected double calculateAverageBondLength()

getmTransformation

public DepictorTransformation getmTransformation()