Package com.actelion.research.gui

Class JDrawArea

  • All Implemented Interfaces:
    java.awt.event.ActionListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible
    public class JDrawArea
extends javax.swing.JPanel
implements java.awt.event.ActionListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener
    See Also:
    Serialized Form

    • Nested Class Summary

      • Nested classes/interfaces inherited from class javax.swing.JPanel

        javax.swing.JPanel.AccessibleJPanel

      • Nested classes/interfaces inherited from class javax.swing.JComponent

        javax.swing.JComponent.AccessibleJComponent

      • Nested classes/interfaces inherited from class java.awt.Container

        java.awt.Container.AccessibleAWTContainer

      • Nested classes/interfaces inherited from class java.awt.Component

        java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void actionPerformed​(java.awt.event.ActionEvent e)  
      void addDrawAreaListener​(DrawAreaListener l)  
      protected void buttonPressed​(int button)  
      static java.awt.Color chainHiliteColor()  
      void clearAll()  
      int getDisplayMode()  
      DrawingObjectList getDrawingObjects()  
      StereoMolecule[] getFragments()  
      int getHiliteAtom()  
      int getHiliteBond()  
      MarkushStructure getMarkushStructure()  
      int getMode()  
      StereoMolecule getMolecule()  
      Reaction getReaction()  
      Reaction getReactionAndDrawings()  
      boolean isAtomColorSupported()  
      void keyPressed​(java.awt.event.KeyEvent e)  
      void keyReleased​(java.awt.event.KeyEvent e)  
      void keyTyped​(java.awt.event.KeyEvent e)  
      static java.awt.Color lassoColor()  
      static java.awt.Color mapToolColor()  
      void moleculeChanged()
      Use this to inform the JDrawArea after changing its molecule from outside.
      void moleculeChanged​(boolean userChange)
      Ideally don't use this from outside JDrawArea.
      void mouseClicked​(java.awt.event.MouseEvent e)  
      void mouseDragged​(java.awt.event.MouseEvent e)  
      void mouseEntered​(java.awt.event.MouseEvent e)  
      void mouseExited​(java.awt.event.MouseEvent e)  
      void mouseMoved​(java.awt.event.MouseEvent e)  
      void mousePressed​(java.awt.event.MouseEvent e)  
      void mouseReleased​(java.awt.event.MouseEvent e)  
      void paintComponent​(java.awt.Graphics g)  
      protected void restoreState()  
      static java.awt.Color selectionColor()  
      void setAllowQueryFeatures​(boolean allow)
      If set to false then any query features will be removed from the molecule and any functionality that allows to define atom- or bond-query features won't be available.
      void setAtomColorSupported​(boolean acs)  
      void setAtomText​(java.lang.String[] atomText)
      Defines additional atom text to be displayed in top right position of some/all atom label.
      void setClipboardHandler​(IClipboardHandler h)
      Call this after initialization to get clipboard support
      void setDisplayMode​(int dMode)  
      void setDrawingObjects​(DrawingObjectList drawingObjectList)  
      void setFragments​(StereoMolecule[] fragment)  
      void setHiliteBondSet​(int[] bondSet)  
      void setMarkushStructure​(MarkushStructure markush)  
      void setMolecule​(StereoMolecule theMolecule)  
      void setReaction​(Reaction rxn)  
      void setReactionMapper​(IReactionMapper mapper)  
      void setReactionMode​(boolean rxn)  
      protected void setUpdateMode​(int mode)  
      void showHelpDialog()  
      void storeState()  
      void toolChanged​(int newTool)  

      • Methods inherited from class javax.swing.JPanel

        getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

      • Methods inherited from class javax.swing.JComponent

        addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

      • Methods inherited from class java.awt.Container

        add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

      • Methods inherited from class java.awt.Component

        action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    • Constructor Detail

      • JDrawArea

        public JDrawArea​(StereoMolecule mol,
                 int mode)
        Parameters:
        mol - an empty or valid stereo molecule
        mode - 0 or a meaningful combination of the mode flags, e.g. MODE_REACTION | MODE_DRAWING_OBJECTS

    • Method Detail

      • setClipboardHandler

        public void setClipboardHandler​(IClipboardHandler h)
        Call this after initialization to get clipboard support
        Parameters:
        h -

      • setReactionMapper

        public void setReactionMapper​(IReactionMapper mapper)

      • paintComponent

        public void paintComponent​(java.awt.Graphics g)
        Overrides:
        paintComponent in class javax.swing.JComponent

      • lassoColor

        public static java.awt.Color lassoColor()

      • selectionColor

        public static java.awt.Color selectionColor()

      • mapToolColor

        public static java.awt.Color mapToolColor()

      • chainHiliteColor

        public static java.awt.Color chainHiliteColor()

      • buttonPressed

        protected void buttonPressed​(int button)

      • clearAll

        public void clearAll()

      • toolChanged

        public void toolChanged​(int newTool)

      • actionPerformed

        public void actionPerformed​(java.awt.event.ActionEvent e)
        Specified by:
        actionPerformed in interface java.awt.event.ActionListener

      • mousePressed

        public void mousePressed​(java.awt.event.MouseEvent e)
        Specified by:
        mousePressed in interface java.awt.event.MouseListener

      • mouseReleased

        public void mouseReleased​(java.awt.event.MouseEvent e)
        Specified by:
        mouseReleased in interface java.awt.event.MouseListener

      • mouseEntered

        public void mouseEntered​(java.awt.event.MouseEvent e)
        Specified by:
        mouseEntered in interface java.awt.event.MouseListener

      • mouseExited

        public void mouseExited​(java.awt.event.MouseEvent e)
        Specified by:
        mouseExited in interface java.awt.event.MouseListener

      • mouseClicked

        public void mouseClicked​(java.awt.event.MouseEvent e)
        Specified by:
        mouseClicked in interface java.awt.event.MouseListener

      • mouseDragged

        public void mouseDragged​(java.awt.event.MouseEvent e)
        Specified by:
        mouseDragged in interface java.awt.event.MouseMotionListener

      • mouseMoved

        public void mouseMoved​(java.awt.event.MouseEvent e)
        Specified by:
        mouseMoved in interface java.awt.event.MouseMotionListener

      • keyPressed

        public void keyPressed​(java.awt.event.KeyEvent e)
        Specified by:
        keyPressed in interface java.awt.event.KeyListener

      • showHelpDialog

        public void showHelpDialog()

      • keyReleased

        public void keyReleased​(java.awt.event.KeyEvent e)
        Specified by:
        keyReleased in interface java.awt.event.KeyListener

      • keyTyped

        public void keyTyped​(java.awt.event.KeyEvent e)
        Specified by:
        keyTyped in interface java.awt.event.KeyListener

      • restoreState

        protected void restoreState()

      • storeState

        public void storeState()

      • moleculeChanged

        public void moleculeChanged()
        Use this to inform the JDrawArea after changing its molecule from outside.

      • moleculeChanged

        public void moleculeChanged​(boolean userChange)
        Ideally don't use this from outside JDrawArea. Use moleculeChanged() instead.
        Parameters:
        userChange - is true if the change was done within the editor

      • setMolecule

        public void setMolecule​(StereoMolecule theMolecule)

      • setFragments

        public void setFragments​(StereoMolecule[] fragment)

      • getReaction

        public Reaction getReaction()
        Returns:
        mapped reaction with absolute coordinates, but without drawing objects

      • getReactionAndDrawings

        public Reaction getReactionAndDrawings()
        Returns:
        mapped reaction with absolute coordinates and drawing objects

      • setReaction

        public void setReaction​(Reaction rxn)

      • setMarkushStructure

        public void setMarkushStructure​(MarkushStructure markush)

      • getDisplayMode

        public int getDisplayMode()

      • setDisplayMode

        public void setDisplayMode​(int dMode)

      • setAllowQueryFeatures

        public void setAllowQueryFeatures​(boolean allow)
        If set to false then any query features will be removed from the molecule and any functionality that allows to define atom- or bond-query features won't be available. This feature is only relevant if the molecule is a fragment.
        Parameters:
        allow -

      • setAtomText

        public void setAtomText​(java.lang.String[] atomText)
        Defines additional atom text to be displayed in top right position of some/all atom label. If the atom is charged, then the atom text follows the charge information. If using atom text make sure to update it accordingly, if atom indexes change due to molecule changes. Atom text is not supported for MODE_REACTION, MODE_MULTIPLE_FRAGMENTS or MODE_MARKUSH_STRUCTURE.
        Parameters:
        atomText - String[] matching atom indexes (may contain null entries)

      • setDrawingObjects

        public void setDrawingObjects​(DrawingObjectList drawingObjectList)

      • getMode

        public int getMode()

      • getHiliteAtom

        public int getHiliteAtom()

      • getHiliteBond

        public int getHiliteBond()

      • setHiliteBondSet

        public void setHiliteBondSet​(int[] bondSet)

      • setReactionMode

        public void setReactionMode​(boolean rxn)

      • setUpdateMode

        protected void setUpdateMode​(int mode)

      • isAtomColorSupported

        public boolean isAtomColorSupported()

      • setAtomColorSupported

        public void setAtomColorSupported​(boolean acs)