Package com.actelion.research.chem.interactionstatistics

Class InteractionSimilarityTable

java.lang.Object

com.actelion.research.chem.interactionstatistics.InteractionSimilarityTable

public class InteractionSimilarityTable
extends java.lang.Object

distance gives the distance of the point of highest potential. equivalence makes the difference, considering the distance and the potential distance is absolute, equivalence is relative to another distance

Author:

freyssj, modified by JW

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	InteractionSimilarityTable.InteractionDescriptor

Method Summary

Modifier and Type	Method	Description
double	getDissimilarity(int type1, int type2)	D(LigandType_1, LigandType_2) = Sum( d( F(ProteinType_i, LigandType_1), F(ProteinType_i, LigandType_2)), i)
double	getDistance(int type1, int type2)
java.util.List<java.lang.Integer>	getEquivalentTypes(int type, double maxDist)	Compare similarity values of 2 types (across all lines)
static InteractionSimilarityTable	getInstance()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getInstance

public static InteractionSimilarityTable getInstance()

getDistance

public double getDistance(int type1,
                          int type2)

getDissimilarity

public double getDissimilarity(int type1,
                               int type2)

D(LigandType_1, LigandType_2) = Sum( d( F(ProteinType_i, LigandType_1), F(ProteinType_i, LigandType_2)), i)

Parameters:

type1 -

type2 -

Returns:

getEquivalentTypes

public java.util.List<java.lang.Integer> getEquivalentTypes(int type,
                                                            double maxDist)

Compare similarity values of 2 types (across all lines)

Parameters:

type -

maxDist -

Returns: