Uses of Class
com.actelion.research.chem.descriptor.pharmacophoretree.PharmacophoreTree

Packages that use PharmacophoreTree

Package	Description
com.actelion.research.chem.descriptor.pharmacophoretree

Uses of PharmacophoreTree in com.actelion.research.chem.descriptor.pharmacophoretree

Fields in com.actelion.research.chem.descriptor.pharmacophoretree declared as PharmacophoreTree

Modifier and Type	Field	Description
static PharmacophoreTree	DescriptorHandlerPTree.FAILED_OBJECT

Methods in com.actelion.research.chem.descriptor.pharmacophoretree that return PharmacophoreTree

Modifier and Type	Method	Description
PharmacophoreTree	DescriptorHandlerPTree.createDescriptor(StereoMolecule mol)
PharmacophoreTree	DescriptorHandlerPTree.decode(byte[] arr)
PharmacophoreTree	DescriptorHandlerPTree.decode(java.lang.String s)
static PharmacophoreTree	PharmacophoreTreeGenerator.generate(StereoMolecule mol)
static PharmacophoreTree	PharmacophoreTreeGenerator.generate(StereoMolecule mol, java.util.Map<java.lang.Integer,java.util.List<java.lang.Integer>> atomToNodes, java.util.List<java.util.Set<java.lang.Integer>> rings)	the parameter rings can be used for fragments/building blocks to submit atoms that will belong to a ring after they react

Methods in com.actelion.research.chem.descriptor.pharmacophoretree that return types with arguments of type PharmacophoreTree

Modifier and Type	Method	Description
DescriptorHandler<PharmacophoreTree,StereoMolecule>	DescriptorHandlerPTree.getThreadSafeCopy()

Methods in com.actelion.research.chem.descriptor.pharmacophoretree with parameters of type PharmacophoreTree

Modifier and Type	Method	Description
boolean	DescriptorHandlerPTree.calculationFailed(PharmacophoreTree o)
java.lang.String	DescriptorHandlerPTree.encode(PharmacophoreTree pTree)
double	PharmacophoreTree.getDirectSim(PharmacophoreTree pTree2)
float	DescriptorHandlerPTree.getSimilarity(PharmacophoreTree pt1, PharmacophoreTree pt2)

Constructors in com.actelion.research.chem.descriptor.pharmacophoretree with parameters of type PharmacophoreTree

Constructor	Description
TreeMatcher(PharmacophoreTree queryTree, PharmacophoreTree baseTree)