Package com.actelion.research.chem

Class Mutation

java.lang.Object

com.actelion.research.chem.Mutation

public class Mutation
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field	Description
static int[][]	cAllowedAtomicNo
int[]	mAtomList
int	mMutationType
double	mProbability
int	mSpecifier1
int	mSpecifier2
static int	MUTATION_ADD_ATOM
static int	MUTATION_CHANGE_ATOM
static int	MUTATION_CHANGE_BOND
static int	MUTATION_CHANGE_RING
static int	MUTATION_CLOSE_RING
static int	MUTATION_CLOSE_RING_AND_AROMATIZE
static int	MUTATION_CUTOUT_ATOM
static int	MUTATION_CUTOUT_SFRAGMENT
static int	MUTATION_DELETE_ATOM
static int	MUTATION_DELETE_BOND
static int	MUTATION_DELETE_SUBSTITUENT
static int	MUTATION_INSERT_ATOM
static int	MUTATION_INVERT_PARITY
static int	MUTATION_MIGRATE
static int	MUTATION_SWAP_SUBSTITUENT
static int	MUTATION_TOGGLE_AMID_SULFONAMID
int	mWhere1
int	mWhere2

Constructor Summary

Constructors

Constructor	Description
Mutation()
Mutation(int mutationType, int where1, int where2, int specifier1, int[] atomList, double probability)
Mutation(int mutationType, int where1, int where2, int specifier1, int specifier2, double probability)

Method Summary

Modifier and Type	Method	Description
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

MUTATION_ADD_ATOM

public static final int MUTATION_ADD_ATOM

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Constant Field Values

MUTATION_INSERT_ATOM

public static final int MUTATION_INSERT_ATOM

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Constant Field Values

MUTATION_CHANGE_ATOM

public static final int MUTATION_CHANGE_ATOM

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Constant Field Values

MUTATION_CUTOUT_ATOM

public static final int MUTATION_CUTOUT_ATOM

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Constant Field Values

MUTATION_DELETE_ATOM

public static final int MUTATION_DELETE_ATOM

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Constant Field Values

MUTATION_CLOSE_RING

public static final int MUTATION_CLOSE_RING

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Constant Field Values

MUTATION_CHANGE_BOND

public static final int MUTATION_CHANGE_BOND

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Constant Field Values

MUTATION_DELETE_BOND

public static final int MUTATION_DELETE_BOND

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Constant Field Values

MUTATION_CHANGE_RING

public static final int MUTATION_CHANGE_RING

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Constant Field Values

MUTATION_CLOSE_RING_AND_AROMATIZE

public static final int MUTATION_CLOSE_RING_AND_AROMATIZE

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Constant Field Values

MUTATION_TOGGLE_AMID_SULFONAMID

public static final int MUTATION_TOGGLE_AMID_SULFONAMID

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Constant Field Values

MUTATION_MIGRATE

public static final int MUTATION_MIGRATE

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Constant Field Values

MUTATION_SWAP_SUBSTITUENT

public static final int MUTATION_SWAP_SUBSTITUENT

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Constant Field Values

MUTATION_DELETE_SUBSTITUENT

public static final int MUTATION_DELETE_SUBSTITUENT

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Constant Field Values

MUTATION_CUTOUT_SFRAGMENT

public static final int MUTATION_CUTOUT_SFRAGMENT

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Constant Field Values

MUTATION_INVERT_PARITY

public static final int MUTATION_INVERT_PARITY

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Constant Field Values

cAllowedAtomicNo

public static final int[][] cAllowedAtomicNo

mMutationType

public int mMutationType

mWhere1

public int mWhere1

mWhere2

public int mWhere2

mSpecifier1

public int mSpecifier1

mSpecifier2

public int mSpecifier2

mAtomList

public int[] mAtomList

mProbability

public double mProbability

Constructor Detail

Mutation

public Mutation()

Mutation

public Mutation(int mutationType,
                int where1,
                int where2,
                int specifier1,
                int specifier2,
                double probability)

Mutation

public Mutation(int mutationType,
                int where1,
                int where2,
                int specifier1,
                int[] atomList,
                double probability)

Method Detail

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object