public class MolfileParser
extends java.lang.Object

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`StereoMolecule`	`getCompactMolecule(java.io.BufferedReader reader)`
`StereoMolecule`	`getCompactMolecule(java.io.File file)`
`StereoMolecule`	`getCompactMolecule(java.lang.String molFile)`
`int[]`	`getHandleHydrogenMap()`	If this MoflileParser was instantiated with MODE_KEEP_HYDROGEN_MAP
`boolean`	`parse(StereoMolecule m, java.io.BufferedReader rd)`
`boolean`	`parse(StereoMolecule mol, java.io.File file)`
`boolean`	`parse(StereoMolecule mol, java.lang.String molFile)`
`boolean`	`parse(StereoMolecule mol, java.lang.StringBuffer molFile)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

public boolean parse(StereoMolecule mol,
                     java.io.File file)

public boolean parse(StereoMolecule mol,
                     java.lang.String molFile)

public boolean parse(StereoMolecule mol,
                     java.lang.StringBuffer molFile)

public boolean parse(StereoMolecule m,
                     java.io.BufferedReader rd)

public StereoMolecule getCompactMolecule(java.lang.String molFile)

public StereoMolecule getCompactMolecule(java.io.BufferedReader reader)

public StereoMolecule getCompactMolecule(java.io.File file)

Constructor	Description
`MolfileParser()`	Constructor of a MolFileParser, which will mirror Y,Z coordinates
`MolfileParser(int mode)`

Fields
Modifier and Type	Field	Description
`static boolean`	`debug`
`static int`	`MODE_KEEP_HYDROGEN_MAP`

Class MolfileParser