Package com.actelion.research.calc

Class BinarySOM

java.lang.Object

com.actelion.research.calc.DataProcessor

com.actelion.research.calc.SelfOrganizedMap

com.actelion.research.calc.BinarySOM

public class BinarySOM
extends SelfOrganizedMap

Field Summary

Fields inherited from class com.actelion.research.calc.SelfOrganizedMap

cModeFastBestMatchFinding, cModeGrowDuringOptimization, cModeNeighbourhoodGaussean, cModeNeighbourhoodLinear, cModeNeighbourhoodMexicanHat, cModeTopologyUnlimited, mController, mInfluence, mMode, mNX, mNY, mReferenceVector

Constructor Summary

Constructors

Constructor	Description
BinarySOM()
BinarySOM(int nx, int ny, int mode)

Method Summary

Modifier and Type	Method	Description
protected void	applyInfluences(java.lang.Object inputVector, java.awt.Point location)
protected void	calculateInfluences(double time)
double	getDissimilarity(java.lang.Object vector1, java.lang.Object vector2)
protected java.lang.Object	getMeanVector(java.lang.Object vector1, java.lang.Object vector2)
protected java.lang.Object	getRandomVector()
protected void	initializeNormalization()
java.lang.Object	normalizeVector(java.lang.Object vector)
void	read(java.io.BufferedReader reader)
protected java.lang.String	referenceVectorToString(int x, int y)
protected void	setReferenceVector(int x, int y, java.lang.String ref)
protected void	updateReference(java.lang.Object inputVector, java.lang.Object referenceVector, double influence)
void	write(java.io.BufferedWriter writer)

Methods inherited from class com.actelion.research.calc.SelfOrganizedMap

applyInfluencesSMP, extractValue, findBestMatchLocation, findBestMatchLocationQuickly, findBestMatchLocationSMP, findExactMatchLocation, getChaos, getCreationMode, getHeight, getInfluence, getMatchScore, getNeighbourInfluence, getReferenceVector, getTimeInfluence, getWidth, initializeReferenceVectors, organize, setController

Methods inherited from class com.actelion.research.calc.DataProcessor

addProgressListener, removeProgressListener, setThreadMaster, setVerbose, startProgress, stopProgress, threadMustDie, updateProgress

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BinarySOM

public BinarySOM()

BinarySOM

public BinarySOM(int nx,
                 int ny,
                 int mode)

Method Detail

initializeNormalization

protected void initializeNormalization()

Specified by:

initializeNormalization in class SelfOrganizedMap

write

public void write(java.io.BufferedWriter writer)
           throws java.io.IOException

Overrides:

write in class SelfOrganizedMap

Throws:

java.io.IOException

read

public void read(java.io.BufferedReader reader)
          throws java.lang.Exception

Overrides:

read in class SelfOrganizedMap

Throws:

java.lang.Exception

referenceVectorToString

protected java.lang.String referenceVectorToString(int x,
                                                   int y)

Specified by:

referenceVectorToString in class SelfOrganizedMap

setReferenceVector

protected void setReferenceVector(int x,
                                  int y,
                                  java.lang.String ref)
                           throws java.lang.Exception

Specified by:

setReferenceVector in class SelfOrganizedMap

Throws:

java.lang.Exception

getDissimilarity

public double getDissimilarity(java.lang.Object vector1,
                               java.lang.Object vector2)

Specified by:

getDissimilarity in class SelfOrganizedMap

updateReference

protected void updateReference(java.lang.Object inputVector,
                               java.lang.Object referenceVector,
                               double influence)

Specified by:

updateReference in class SelfOrganizedMap

getRandomVector

protected java.lang.Object getRandomVector()

Specified by:

getRandomVector in class SelfOrganizedMap

getMeanVector

protected java.lang.Object getMeanVector(java.lang.Object vector1,
                                         java.lang.Object vector2)

Specified by:

getMeanVector in class SelfOrganizedMap

normalizeVector

public java.lang.Object normalizeVector(java.lang.Object vector)

Specified by:

normalizeVector in class SelfOrganizedMap

calculateInfluences

protected void calculateInfluences(double time)

Overrides:

calculateInfluences in class SelfOrganizedMap

applyInfluences

protected void applyInfluences(java.lang.Object inputVector,
                               java.awt.Point location)

Overrides:

applyInfluences in class SelfOrganizedMap