TestPileup Member List

This is the complete list of members for TestPileup, including all inherited members.

flushPileup()	Pileup< TestPileupElement >
Pileup(const defaultPileup< TestPileupElement > &fp=defaultPileup< TestPileupElement >())	Pileup< TestPileupElement >
Pileup(int window, const defaultPileup< TestPileupElement > &fp=defaultPileup< TestPileupElement >())	Pileup< TestPileupElement >
Pileup(const std::string &refSeqFileName, const defaultPileup< TestPileupElement > &fp=defaultPileup< TestPileupElement >())	Pileup< TestPileupElement >
Pileup(int window, const std::string &refSeqFileName, const defaultPileup< TestPileupElement > &fp=defaultPileup< TestPileupElement >())	Pileup< TestPileupElement >
processAlignment(SamRecord &record)	Pileup< TestPileupElement >	virtual
processAlignmentRegion(SamRecord &record, int startPos, int endPos, PosList *excludeList=NULL)	Pileup< TestPileupElement >	virtual
processFile(const std::string &fileName, uint16_t excludeFlag=0x0704, uint16_t includeFlag=0)	Pileup< TestPileupElement >	virtual
testPileupPosition() (defined in TestPileup)	TestPileup
~Pileup()	Pileup< TestPileupElement >	virtual