|
libStatGen Software 1
|
This is the complete list of members for Tabix, including all inherited members.
| Format enum name (defined in Tabix) | Tabix | |
| FORMAT_GENERIC enum value (defined in Tabix) | Tabix | |
| FORMAT_SAM enum value (defined in Tabix) | Tabix | |
| FORMAT_VCF enum value (defined in Tabix) | Tabix | |
| getBinsForRegion(uint32_t start, uint32_t end, bool binMap[MAX_NUM_BINS+1]) (defined in IndexBase) | IndexBase | protectedstatic |
| getFormat() const (defined in Tabix) | Tabix | inline |
| getMinOffsetFromLinearIndex(int32_t refID, uint32_t position, uint64_t &minOffset) const (defined in IndexBase) | IndexBase | |
| getNumRefs() const | IndexBase | |
| getRefName(unsigned int indexNum) const | Tabix | |
| getStartPos(const char *refName, int32_t start, uint64_t &fileStartPos) const | Tabix | |
| IndexBase() (defined in IndexBase) | IndexBase | |
| LINEAR_INDEX_SHIFT (defined in IndexBase) | IndexBase | protectedstatic |
| MAX_NUM_BINS (defined in IndexBase) | IndexBase | protectedstatic |
| MAX_POSITION (defined in IndexBase) | IndexBase | protectedstatic |
| myRefs (defined in IndexBase) | IndexBase | protected |
| n_ref (defined in IndexBase) | IndexBase | protected |
| readIndex(const char *filename) | Tabix | virtual |
| resetIndex() | Tabix | virtual |
| Tabix() (defined in Tabix) | Tabix | |
| ~IndexBase() (defined in IndexBase) | IndexBase | virtual |
| ~Tabix() (defined in Tabix) | Tabix | virtual |