java.lang.Object

org.jmol.viewer.TransformManager

org.jmol.viewer.TransformManager4D

public class TransformManager4D extends TransformManager

Field Summary

Fields

Modifier and Type

Field

Description

private boolean

is4D

private javajs.util.M4

m2_rotate

private final javajs.util.M4

m3_toScreen

private final javajs.util.M4

m4

private static final int

MODE_3D

private static final int

MODE_4D_WX

private static final int

MODE_4D_WY

private static final int

MODE_4D_WZ

private int

mouseMode

private javajs.util.T4

p4

private final javajs.util.T3

v1

private final javajs.util.V3

zero

private float

zOffset

Fields inherited from class org.jmol.viewer.TransformManager
aaTest1, antialias, aperatureAngle, bsFrameOffsets, bsSelectedAtoms, camera, cameraDepth, cameraDepthSetting, cameraDistance, cameraDistanceFromCenter, cameraScaleFactor, cameraSetting, DEFAULT_CAMERA_DEPTH, DEFAULT_NAV_FPS, DEFAULT_PERSPECTIVE_DEPTH, DEFAULT_PERSPECTIVE_MODEL, DEFAULT_SPIN_FPS, DEFAULT_SPIN_Y, DEFAULT_STEREO_DEGREES, DEFAULT_VISUAL_RANGE, defaultMode, degreesPerRadian, depthPercentSetting, depthPlane, depthValue, doTransform4D, fixedRotationAxis, fixedRotationCenter, fixedRotationOffset, fixedTranslation, frameOffset, frameOffsets, fScrPt, haveNotifiedNaN, height, internalRotationAxis, internalRotationCenter, internalSlab, internalTranslation, iScrPt, isSpinFixed, isSpinInternal, isSpinSelected, matrixRotate, matrixStereo, matrixTemp, matrixTemp3, matrixTest, matrixTransform, matrixTransformInv, MAXIMUM_ZOOM_PERCENTAGE, mode, MODE_NAVIGATION, MODE_PERSPECTIVE_PYMOL, MODE_STANDARD, modelCenterOffset, modelRadius, modelRadiusPixels, movetoThread, NAV_MODE_IGNORE, NAV_MODE_NEWXY, NAV_MODE_NEWXYZ, NAV_MODE_NEWZ, NAV_MODE_NONE, NAV_MODE_RESET, NAV_MODE_ZOOMED, navFps, navigating, navigationCenter, navigationDepthPercent, navigationOffset, navigationShiftXY, navigationSlabOffset, navMode, navOn, navX, navY, navZ, perspectiveDepth, perspectiveModel, perspectiveOffset, perspectiveShiftXY, previousX, previousY, prevZoomSetting, ptOffset, ptTest1, ptTest2, ptTest3, ptVibTemp, referencePlaneOffset, rotationAxis, rotationRate, scale3D, scale3DAngstromsPerInch, scaleDefaultPixelsPerAngstrom, scalePixelsPerAngstrom, screenHeight, screenPixelCount, screenWidth, slabEnabled, slabPercentSetting, slabPlane, slabRange, slabValue, spinFps, spinOn, spinThread, spinX, spinY, spinZ, stereoColors, stereoDegrees, stereoDoubleDTI, stereoDoubleFull, stereoFrame, stereoMode, stereoRadians, untransformedPoint, vectorTemp, vibrationOn, vibrationPeriod, vibrationPeriodMs, vibrationThread, visualRangeAngstroms, vwr, width, windowCentered, xTranslationFraction, yTranslationFraction, zDepthPercentSetting, zDepthValue, zmPct, zmPctSet, zoomEnabled, zoomFactor, zShadeEnabled, zSlabPercentSetting, zSlabPoint, zSlabValue
Constructor Summary

Constructors

Constructor

Description

TransformManager4D()
Method Summary

Modifier and Type

Method

Description

void

calcTransformMatrix()

private void

checkM2()

protected void

getScreenTemp(javajs.util.T3 ptXYZ)

void

resetRotation()

protected void

rotate4DBall(float xDelta, float yDelta, float zDelta)

protected void

rotateXYBy(float xDelta, float yDelta, javajs.util.BS bsAtoms)

void

setAsBallRotation(javajs.util.M4 m, float scale, float dx, float dy, float dz)

4D ball rotation from nominal dx, dy, dz motion.

Methods inherited from class org.jmol.viewer.TransformManager
angstromsToPixels, calcCameraFactors, calcNavigationPoint, calcSlabAndDepthValues, centerAt, clear, clearThreads, defaultScaleToScreen, depthByPercentagePoints, depthToPercent, finalizeTransformParameters, getCameraDepth, getCameraFactors, getMoveToText, getNavigationOffset, getNavigationOffsetPercent, getNavigationState, getNavigationText, getNavPtHeight, getNewFixedRotationCenter, getOrientationInfo, getOrientationText, getPerspectiveDepth, getPerspectiveFactor, getRotation, getRotationQ, getRotationText, getSlabPercentSetting, getStereoRotationMatrix, getTransformManager, getTranslationScript, getTranslationXPercent, getTranslationYPercent, getVibrationPoint, getZoomSetting, homePosition, isInPosition, isNavigating, isVibrationOn, isWindowCentered, move, moveRotationCenter, moveTo, moveToPyMOL, navigateAxis, navigateKey, navigateList, navTranslatePercentOrTo, percentToPixels, resetNavigationPoint, rotate3DBall, rotateAboutPointsInternal, rotateAxisAngle, rotateAxisAngleAtCenter, rotateAxisAngleRadiansFixed, rotateAxisAngleRadiansInternal, rotatePoint, rotateXRadians, rotateYRadians, rotateZBy, rotateZRadians, scaleFitToScreen, scaleToPerspective, scaleToScreen, setAll, setAntialias, setCamera, setCameraDepthPercent, setCenter, setCenterAt, setDefaultPerspective, setFrameOffset, setNavFps, setNavigatePt, setNavigationDepthPercent, setNavigationMode, setNavigationOffsetRelative, setNavigationSlabOffsetPercent, setNavOn, setNavXYZ, setNewRotationCenter, setPerspectiveDepth, setRotation, setRotationPointXY, setRotationRadius, setScaleAngstromsPerInch, setScreenParameters, setSelectedTranslation, setSlabDepthInternal, setSlabEnabled, setSlabRange, setSpinFps, setSpinOff, setSpinOn, setSpinXYZ, setStereoDegrees, setStereoMode, setStereoMode2, setTranslationFractions, setVibrationPeriod, setVibrationScale, setVibrationT, setWindowCentered, setZoomEnabled, setZoomHeight, setZShadeEnabled, slabByPercentagePoints, slabDepthByPercentagePoints, slabInternal, slabReset, slabToPercent, spinXYBy, stopMotion, transformPt, transformPt2D, transformPt2Df, transformPt3f, transformPtNoClip, transformPtScr, transformPtScrT3, transformPtScrT32D, transformPtVib, translateToPercent, translateXYBy, translateZBy, unscaleToScreen, unTransformPoint, xyzIsSlabbedInternal, zDepthToPercent, zoomBy, zoomByFactor, zoomByPercent, zoomToPercent, zSlabToPercent, zValueFromPercent

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- MODE_3D
  
  private static final int MODE_3D
  See Also:
  
  Constant Field Values
- MODE_4D_WX
  
  private static final int MODE_4D_WX
  See Also:
  
  Constant Field Values
- MODE_4D_WY
  
  private static final int MODE_4D_WY
  See Also:
  
  Constant Field Values
- MODE_4D_WZ
  
  private static final int MODE_4D_WZ
  See Also:
  
  Constant Field Values
- is4D
  
  private boolean is4D
- mouseMode
  
  private int mouseMode
- m2_rotate
  
  private javajs.util.M4 m2_rotate
- m3_toScreen
  
  private final javajs.util.M4 m3_toScreen
- zOffset
  
  private float zOffset
- v1
  
  private final javajs.util.T3 v1
- m4
  
  private final javajs.util.M4 m4
- p4
  
  private javajs.util.T4 p4
- zero
  
  private final javajs.util.V3 zero
Constructor Details
- TransformManager4D
  
  public TransformManager4D()
Method Details
- resetRotation
  
  public void resetRotation()
  
  Overrides:
  
  resetRotation in class TransformManager
- rotateXYBy
  
  protected void rotateXYBy(float xDelta, float yDelta, javajs.util.BS bsAtoms)
  
  Overrides:
  
  rotateXYBy in class TransformManager
- rotate4DBall
  
  protected void rotate4DBall(float xDelta, float yDelta, float zDelta)
- setAsBallRotation
  
  public void setAsBallRotation(javajs.util.M4 m, float scale, float dx, float dy, float dz)
  
  4D ball rotation from nominal dx, dy, dz motion.
  
  Parameters:
  
  m -
  
  scale -
  
  dx -
  
  dy -
  
  dz -
- checkM2
  
  private void checkM2()
- calcTransformMatrix
  
  public void calcTransformMatrix()
  
  Overrides:
  
  calcTransformMatrix in class TransformManager
- getScreenTemp
  
  protected void getScreenTemp(javajs.util.T3 ptXYZ)
  
  Overrides:
  
  getScreenTemp in class TransformManager

Class TransformManager4D

Field Summary

Fields inherited from class org.jmol.viewer.TransformManager

Constructor Summary

Method Summary

Methods inherited from class org.jmol.viewer.TransformManager

Methods inherited from class java.lang.Object

Field Details

MODE_3D

MODE_4D_WX

MODE_4D_WY

MODE_4D_WZ

is4D

mouseMode

m2_rotate

m3_toScreen

zOffset

v1

m4

p4

zero

Constructor Details

TransformManager4D

Method Details

resetRotation

rotateXYBy

rotate4DBall

setAsBallRotation

checkM2

calcTransformMatrix

getScreenTemp