Package org.jmol.util

Class MeshSurface

java.lang.Object
org.jmol.util.MeshSurface
Direct Known Subclasses:
Mesh, MeshData
public class MeshSurface extends Object

  • Field Details

    • SEED_COUNT

      protected static final int SEED_COUNT
      See Also:

    • P_CHECK

      public static final int P_CHECK
      See Also:

    • P_CONTOUR

      public static final int P_CONTOUR
      See Also:

    • P_EXPLICIT_COLOR

      public static final int P_EXPLICIT_COLOR
      See Also:

    • vwr

      public Viewer vwr

    • slicer

      private MeshSlicer slicer

    • oabc

      public javajs.util.V3[] oabc

    • meshType

      public String meshType

    • vc

      public int vc
      vertex count

    • vs

      public javajs.util.T3[] vs
      vertices

    • vvs

      public float[] vvs
      vertex values

    • vertexSource

      public int[] vertexSource

    • surfaceAtoms

      public javajs.util.BS surfaceAtoms

    • pc

      public int pc
      polygon count

    • pis

      public int[][] pis
      polygon indexes

    • colorsExplicit

      public boolean colorsExplicit

    • isDrawPolygon

      public boolean isDrawPolygon

    • haveQuads

      public boolean haveQuads

    • colix

      public short colix

    • colixBack

      public short colixBack

    • isColorSolid

      public boolean isColorSolid

    • offset

      public javajs.util.P3 offset

    • altVertices

      public javajs.util.T3[] altVertices

    • pcs

      public short[] pcs
      polygon color index "colix" array

    • vcs

      public short[] vcs
      vertex color index "colix" array

    • normals

      public javajs.util.T3[] normals

    • normalsTemp

      public javajs.util.V3[] normalsTemp

    • normalCount

      public int normalCount

    • normixCount

      public int normixCount

    • bsPolygons

      public javajs.util.BS bsPolygons

    • mat4

      public javajs.util.M4 mat4

    • surfaceSet

      public javajs.util.BS[] surfaceSet

    • vertexSets

      public int[] vertexSets

    • nSets

      public int nSets

    • dataOnly

      public boolean dataOnly

    • lastColor

      private int lastColor

    • lastColix

      private short lastColix

    • iA

      protected int iA

    • iB

      protected int iB

    • iC

      protected int iC

    • polygonCount0

      public int polygonCount0

    • vertexCount0

      public int vertexCount0

    • bsSlabDisplay

      public javajs.util.BS bsSlabDisplay

    • bsSlabGhost

      public javajs.util.BS bsSlabGhost

    • slabMeshType

      public int slabMeshType

    • slabColix

      public short slabColix

    • bsDisplay

      public javajs.util.BS bsDisplay

    • slabOptions

      public javajs.util.SB slabOptions

    • mergeVertexCount0

      public int mergeVertexCount0

    • mergePolygonCount0

      public int mergePolygonCount0

    • isMerged

      public boolean isMerged

  • Constructor Details

    • MeshSurface

      public MeshSurface()

  • Method Details

    • getMeshSlicer

      public MeshSlicer getMeshSlicer()

    • newMesh

      public static MeshSurface newMesh(boolean isAlt, javajs.util.T3[] vertices, int vertexCount, int[][] polygonIndexes, javajs.util.T3[] normals, int nNormals)

    • getVertices

      public javajs.util.T3[] getVertices()
      Returns:
      The vertices.

    • getFaces

      public int[][] getFaces()
      Returns:
      faces, if defined (in exporter), otherwise polygonIndexes

    • setColix

      public void setColix(short colix)

    • setColixBack

      public void setColixBack(short colix)

    • addV

      public int addV(javajs.util.T3 vertex, boolean asCopy)

    • addTriangle

      public void addTriangle(int vertexA, int vertexB, int vertexC)

    • addQuad

      public void addQuad(int vertexA, int vertexB, int vertexC, int vertexD)

    • setPolygonCount

      public void setPolygonCount(int polygonCount)

    • addVCVal

      public int addVCVal(javajs.util.T3 vertex, float value, boolean asCopy)

    • addTriangleCheck

      public int addTriangleCheck(int vertexA, int vertexB, int vertexC, int check, int iContour, int color)

    • addPolygonV3

      int addPolygonV3(int vertexA, int vertexB, int vertexC, int check, int iContour, int color, javajs.util.BS bs)

    • addPolygonC

      protected int addPolygonC(int[] polygon, int color, javajs.util.BS bs, boolean isExplicit)

    • addPolygon

      public int addPolygon(int[] polygon, javajs.util.BS bs)

    • invalidatePolygons

      public void invalidatePolygons()

    • setABC

      protected int[] setABC(int i)

    • setTranslucentVertices

      public void setTranslucentVertices(javajs.util.BS bsVertices)
      Must create bsTransPolygons, polygonTranslucencies, and new triangle set for partially translucent polygons
      Parameters:
      bsVertices -

    • getSlabColor

      public String getSlabColor()

    • getSlabType

      public String getSlabType()

    • resetSlab

      public void resetSlab()

    • slabPolygonsList

      public void slabPolygonsList(javajs.util.Lst<Object[]> slabInfo, boolean allowCap)

    • slabBrillouin

      protected void slabBrillouin(javajs.util.P3[] unitCellVectors)
      Parameters:
      unitCellVectors -

    • getResolution

      public float getResolution()

    • getSphereData

      public static MeshSurface getSphereData(int lvl)
      Calculates the data (faces, vertices, normals) for a sphere.
      Parameters:
      lvl -
      Returns:
      The data.

    • setBox

      public void setBox(javajs.util.P3 xyzMin, javajs.util.P3 xyzMax)

    • setBoundingBox

      public void setBoundingBox(javajs.util.P3[] boundBoxPoints)
      Parameters:
      boundBoxPoints -

    • getSphericalInterpolationFraction

      public static float getSphericalInterpolationFraction(double r, double valueA, double valueB, double d)