Package org.jmol.util

Class MeshSlicer

java.lang.Object
org.jmol.util.MeshSlicer
public class MeshSlicer extends Object

  • Field Summary

    Fields
    Modifier and Type
    Field
    Description
    private MeshCapper
    capper
     
    private boolean
    doCap
     
    private boolean
    doClear
     
    private boolean
    doGhost
     
    private float
    dPlane
     
    (package private) float[]
    fracs
     
    private int
    iD
     
    private int
    iE
     
    protected MeshSurface
    m
     
    (package private) javajs.util.V3
    norm
     
    private javajs.util.P3[]
    pts
     
    private int[]
    sources
     
    (package private) float[]
    values
     
    private float
    wPlane
     

  • Constructor Summary

    Constructors
    Constructor
    Description
    MeshSlicer()
     

  • Method Summary

    Modifier and Type
    Method
    Description
    (package private) int
    addIntersectionVertex(javajs.util.T3 vertex, float value, int source, int set, Map<String,Integer> mapEdge, int i1, int i2)
     
    (package private) void
    addTriangle(int ipt1, int ipt2, int ipt3)
    from MeshCapper
    private float
    checkSlab(int tokType, javajs.util.T3 v, float val, float distance, javajs.util.BS bs)
     
    private javajs.util.P4[]
    getBoxFacesFromOABC(javajs.util.P3[] oabc)
     
    private boolean
    getDE(float[] fracs, int fD, int i1, int i2, int i3, boolean toss23)
     
    void
    getIntersection(float distance, javajs.util.P4 plane, javajs.util.P3[] ptCenters, javajs.util.Lst<javajs.util.P3[]> vData, float[] fData, javajs.util.BS bsSource, MeshSurface meshSurface, boolean andCap, boolean doClean, int tokType, boolean isGhost)
     
    (package private) String
    getKey(int i1, int i2)
     
    private javajs.util.P3
    interpolateFraction(javajs.util.T3 v1, javajs.util.T3 v2, float f, float val1, float val2, int i)
     
    private javajs.util.P3
    interpolatePoint(javajs.util.T3 v1, javajs.util.T3 v2, float d1, float d2, float val1, float val2, int i)
     
    private javajs.util.P3
    interpolateSphere(javajs.util.T3 v1, javajs.util.T3 v2, float d1, float d2, double absD, float val1, float val2, int i)
     
    (package private) MeshSlicer
    set(MeshSurface meshSurface)
     
    private static int
    setPoint(float[] fracs, int i, int i0, int i1)
     
    protected void
    slabBrillouin(javajs.util.P3[] unitCellPoints)
    "slabs" an isosurface into the first Brillouin zone moving points as necessary.
    boolean
    slabPolygons(Object[] slabObject, boolean allowCap)
     

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Field Details

    • m

      protected MeshSurface m

    • doCap

      private boolean doCap

    • doClear

      private boolean doClear

    • doGhost

      private boolean doGhost

    • iD

      private int iD

    • iE

      private int iE

    • sources

      private int[] sources

    • pts

      private javajs.util.P3[] pts

    • norm

      javajs.util.V3 norm

    • dPlane

      private float dPlane

    • values

      float[] values

    • fracs

      float[] fracs

    • capper

      private MeshCapper capper

    • wPlane

      private float wPlane

  • Constructor Details

    • MeshSlicer

      public MeshSlicer()

  • Method Details

    • set

      MeshSlicer set(MeshSurface meshSurface)

    • slabPolygons

      public boolean slabPolygons(Object[] slabObject, boolean allowCap)
      Parameters:
      slabObject - [0] Integer type, [1] object, [2] andCap, [3] colorData
      allowCap -
      Returns:
      true if successful

    • getBoxFacesFromOABC

      private javajs.util.P4[] getBoxFacesFromOABC(javajs.util.P3[] oabc)

    • getIntersection

      public void getIntersection(float distance, javajs.util.P4 plane, javajs.util.P3[] ptCenters, javajs.util.Lst<javajs.util.P3[]> vData, float[] fData, javajs.util.BS bsSource, MeshSurface meshSurface, boolean andCap, boolean doClean, int tokType, boolean isGhost)
      Parameters:
      distance - a distance from a plane or point
      plane - a slabbing plane
      ptCenters - a set of atoms to measure distance from
      vData - when not null, this is a query, not an actual slabbing
      fData - vertex values or other data to overlay
      bsSource - TODO
      meshSurface - second surface; not implemented -- still some problems there
      andCap - to cap this off, crudely only
      doClean - compact set - draw only
      tokType - type of slab
      isGhost - translucent slab, so we mark slabbed triangles

    • getDE

      private boolean getDE(float[] fracs, int fD, int i1, int i2, int i3, boolean toss23)

    • setPoint

      private static int setPoint(float[] fracs, int i, int i0, int i1)

    • checkSlab

      private float checkSlab(int tokType, javajs.util.T3 v, float val, float distance, javajs.util.BS bs)

    • interpolateSphere

      private javajs.util.P3 interpolateSphere(javajs.util.T3 v1, javajs.util.T3 v2, float d1, float d2, double absD, float val1, float val2, int i)

    • interpolatePoint

      private javajs.util.P3 interpolatePoint(javajs.util.T3 v1, javajs.util.T3 v2, float d1, float d2, float val1, float val2, int i)

    • interpolateFraction

      private javajs.util.P3 interpolateFraction(javajs.util.T3 v1, javajs.util.T3 v2, float f, float val1, float val2, int i)

    • slabBrillouin

      protected void slabBrillouin(javajs.util.P3[] unitCellPoints)
      "slabs" an isosurface into the first Brillouin zone moving points as necessary.
      Parameters:
      unitCellPoints -

    • addIntersectionVertex

      int addIntersectionVertex(javajs.util.T3 vertex, float value, int source, int set, Map<String,Integer> mapEdge, int i1, int i2)

    • getKey

      String getKey(int i1, int i2)

    • addTriangle

      void addTriangle(int ipt1, int ipt2, int ipt3)
      from MeshCapper
      Parameters:
      ipt1 -
      ipt2 -
      ipt3 -