org.jmol.shapesurface.LcaoCartoon

All Implemented Interfaces:: MeshDataServer, VertexDataServer

public class LcaoCartoon extends Isosurface

Field Summary

Fields

Modifier and Type

Field

Description

private Object

cappingObject

private String

fullCommand

(package private) boolean

isLonePair

private boolean

isMolecular

(package private) boolean

isRadical

private Integer

lcaoColorNeg

private Integer

lcaoColorPos

private String

lcaoID

private boolean

lcaoReverseColor

private Float

lcaoScale

private boolean

lcaoTranslucent

private float

lcaoTranslucentLevel

private int

myColorPt

private javajs.util.V3

rotationAxis

private Object

slabbingObject

private javajs.util.BS

thisSet

private String

thisType

Fields inherited from class org.jmol.shapesurface.Isosurface
allowMesh, iHaveBitSets, isomeshes, keyXy, sg, thisMesh

Fields inherited from class org.jmol.shape.MeshCollection
bsDisplay, colix, color, connections, currentMesh, displayWithinDistance2, displayWithinPoints, explicitID, htObjects, isDisplayWithinNot, isFixed, jvxlData, linkedMesh, meshCount, meshes, modelIndex, nUnnamed, pickedMesh, pickedModel, pickedPt, pickedVertex, PREVIOUS_MESH_ID, previousMeshID, title

Fields inherited from class org.jmol.shape.Shape
bsColixSet, bsSizeSet, isBioShape, ms, myType, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, vf, vwr
Constructor Summary

Constructors

Constructor

Description

LcaoCartoon()
Method Summary

Modifier and Type

Method

Description

private void

createLcaoCartoon()

private void

createLcaoCartoon(int iAtom)

private void

deleteLcaoCartoon()

private void

deleteLcaoCartoon(int iAtom)

private String

getID(String id, int i)

String

getShapeState()

void

initShape()

void

merge(MeshCollection shape)

called by ParallelProcessor at completion

private void

setLcaoOn(boolean TF)

private void

setLcaoOn(int iAtom, boolean TF)

void

setProperty(String propertyName, Object value, javajs.util.BS bs)

Methods inherited from class org.jmol.shapesurface.Isosurface
addMeshInfo, addRequiredFile, addTriangleCheck, addVertexCopy, allocMesh, calculateGeodesicSurface, checkObjectClicked, checkObjectHovered, clearSg, discardTempData, fillMeshData, getCapSlabInfo, getCmd, getPlane, getPolygonColorData, getProperty, getPropertyData, getPropI, getShapeDetail, getSurfacePointIndexAndFraction, getValue, getValues, getVertices, invalidateTriangles, newSg, notifySurfaceGenerationCompleted, notifySurfaceMappingCompleted, setOutputChannel, setPropI, setRequiredFile, setScriptInfo, slabPolygons

Methods inherited from class org.jmol.shape.MeshCollection
checkExplicit, clean, deleteMeshI, deleteMeshKey, getIndexFromName, getMesh, getMeshList, getPickedPoint, getPropDataMC, getPropMC, resetObjects, setModelVisibilityFlags, setPropMC, setStatusPicked, setTitle, setTokenProperty

Methods inherited from class org.jmol.shape.Shape
appendCmd, checkBoundsMinMax, checkObjectDragged, coordinateInRange, encodeColor, findNearestAtomIndex, getColix, getColixA, getColixB, getColixI, getColorCommand, getColorCommandUnk, getFontCommand, getPropShape, getSize, getSizeG, getTranslucentLabel, initializeShape, initModelSet, replaceGroup, setAtomClickability, setModelSet, setPropS, setShapeSizeRD, setSize, setSizeRD, wasClicked

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- thisType
  
  private String thisType
- myColorPt
  
  private int myColorPt
- lcaoID
  
  private String lcaoID
- thisSet
  
  private javajs.util.BS thisSet
- isMolecular
  
  private boolean isMolecular
- rotationAxis
  
  private javajs.util.V3 rotationAxis
- lcaoScale
  
  private Float lcaoScale
- lcaoTranslucent
  
  private boolean lcaoTranslucent
- lcaoTranslucentLevel
  
  private float lcaoTranslucentLevel
- lcaoColorPos
  
  private Integer lcaoColorPos
- lcaoColorNeg
  
  private Integer lcaoColorNeg
- lcaoReverseColor
  
  private boolean lcaoReverseColor
- isLonePair
  
  boolean isLonePair
- isRadical
  
  boolean isRadical
- cappingObject
  
  private Object cappingObject
- slabbingObject
  
  private Object slabbingObject
- fullCommand
  
  private String fullCommand
Constructor Details
- LcaoCartoon
  
  public LcaoCartoon()
Method Details
- initShape
  
  public void initShape()
  
  Overrides:
  
  initShape in class Isosurface
- setProperty
  
  public void setProperty(String propertyName, Object value, javajs.util.BS bs)
  
  Overrides:
  
  setProperty in class Isosurface
- setLcaoOn
  
  private void setLcaoOn(boolean TF)
- setLcaoOn
  
  private void setLcaoOn(int iAtom, boolean TF)
- deleteLcaoCartoon
  
  private void deleteLcaoCartoon()
- deleteLcaoCartoon
  
  private void deleteLcaoCartoon(int iAtom)
- createLcaoCartoon
  
  private void createLcaoCartoon()
- createLcaoCartoon
  
  private void createLcaoCartoon(int iAtom)
- getID
  
  private String getID(String id, int i)
- getShapeState
  
  public String getShapeState()
  
  Overrides:
  
  getShapeState in class Isosurface
- merge
  
  public void merge(MeshCollection shape)
  
  Description copied from class: MeshCollection
  
  called by ParallelProcessor at completion
  
  Overrides:
  
  merge in class MeshCollection

Class LcaoCartoon

Field Summary

Fields inherited from class org.jmol.shapesurface.Isosurface

Fields inherited from class org.jmol.shape.MeshCollection

Fields inherited from class org.jmol.shape.Shape

Constructor Summary

Method Summary

Methods inherited from class org.jmol.shapesurface.Isosurface

Methods inherited from class org.jmol.shape.MeshCollection

Methods inherited from class org.jmol.shape.Shape

Methods inherited from class java.lang.Object

Field Details

thisType

myColorPt

lcaoID

thisSet

isMolecular

rotationAxis

lcaoScale

lcaoTranslucent

lcaoTranslucentLevel

lcaoColorPos

lcaoColorNeg

lcaoReverseColor

isLonePair

isRadical

cappingObject

slabbingObject

fullCommand

Constructor Details

LcaoCartoon

Method Details

initShape

setProperty

setLcaoOn

setLcaoOn

deleteLcaoCartoon

deleteLcaoCartoon

createLcaoCartoon

createLcaoCartoon

getID

getShapeState

merge