Package org.jmol.shapespecial

Class Polyhedron

java.lang.Object
org.jmol.shapespecial.Polyhedron
public class Polyhedron extends Object

  • Field Details

    • info

      Map<String,Object> info

    • id

      public String id

    • center

      public javajs.util.P3 center

    • centralAtom

      public Atom centralAtom

    • vertices

      public javajs.util.P3[] vertices

    • triangles

      public int[][] triangles

    • faces

      public int[][] faces

    • nVertices

      int nVertices

    • collapsed

      public boolean collapsed

    • bsFlat

      private javajs.util.BS bsFlat

    • distanceRef

      private float distanceRef

    • normals

      private javajs.util.V3[] normals

    • normixes

      private short[] normixes

    • planes

      javajs.util.P4[] planes

    • smiles

      public String smiles

    • smarts

      public String smarts

    • polySmiles

      public String polySmiles

    • pointGroup

      private SymmetryInterface pointGroup
      includes vertices as atoms, with atomic numbers

    • pointGroupFamily

      private SymmetryInterface pointGroupFamily
      includes vertices as generic points

    • volume

      private Float volume

    • visible

      boolean visible

    • isFullyLit

      boolean isFullyLit

    • isValid

      public boolean isValid

    • colixEdge

      public short colixEdge

    • visibilityFlags

      public int visibilityFlags

    • colix

      public short colix

    • modelIndex

      public int modelIndex

    • offset

      private javajs.util.P3 offset

    • scale

      public float scale

    • pointScale

      public float pointScale

    • faceTriangles

      private int[][] faceTriangles

    • elemNos

      private int[] elemNos

  • Constructor Details

    • Polyhedron

      Polyhedron()

  • Method Details

    • set

      Polyhedron set(String id, int modelIndex, javajs.util.P3 atomOrPt, javajs.util.P3[] points, int nPoints, int vertexCount, int[][] triangles, int triangleCount, int[][] faces, int[][] faceTriangles, javajs.util.V3[] normals, javajs.util.BS bsFlat, boolean collapsed, float distanceRef, float pointScale)

    • setInfo

      Polyhedron setInfo(Viewer vwr, Map<String,Object> info, Atom[] at)

    • toInt2

      private int[][] toInt2(boolean isSV, Object o)

    • getInfo

      Map<String,Object> getInfo(Viewer vwr, String property)

    • getElemNos

      public int[] getElemNos()

    • getSymmetry

      String getSymmetry(Viewer vwr, boolean withPointGroup)

    • getVolume

      private Float getVolume()
      allows for n-gon, not just triangle; if last component index is negative, then that's a mesh code
      Returns:
      volume

    • triangleArea

      private float triangleArea(int i, int j, int k, javajs.util.V3 vAB, javajs.util.V3 vAC, javajs.util.V3 vTemp)

    • triangleVolume

      private float triangleVolume(int i, int j, int k, javajs.util.V3 vAB, javajs.util.V3 vAC, javajs.util.V3 vTemp)

    • getState

      String getState(Viewer vwr)

    • move

      void move(javajs.util.M4 mat, javajs.util.BS bsMoved)

    • getNormixes

      public short[] getNormixes()

    • setOffset

      void setOffset(javajs.util.P3 value)