org.jmol.shapespecial.Dots

Direct Known Subclasses:: GeoSurface

public class Dots extends AtomShape

Field Summary

Fields

Modifier and Type

Field

Description

private javajs.util.BS

bsIgnore

(package private) javajs.util.BS

bsOn

private javajs.util.BS

bsSelected

EnvelopeCalculation

ec

boolean

isSurface

static int

MAX_LEVEL

(package private) RadiusData

rdLast

(package private) static final float

SURFACE_DISTANCE_FOR_CALCULATION

(package private) int

thisArgb

(package private) int

thisAtom

(package private) float

thisRadius

Fields inherited from class org.jmol.shape.AtomShape
bsSizeDefault, colixes, isActive, isSet, mad, mads, monomerCount, paletteIDs

Fields inherited from class org.jmol.shape.Shape
bsColixSet, bsSizeSet, isBioShape, ms, myType, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, vf, vwr
Constructor Summary

Constructors

Constructor

Description

Dots()
Method Summary

Modifier and Type

Method

Description

String

getShapeState()

int

getSize(int atomIndex)

overridden in Dots, CGOMesh, and AtomShape

(package private) void

initialize()

void

initShape()

void

setAtomClickability()

void

setProperty(String propertyName, Object value, javajs.util.BS bs)

protected void

setSizeRD(RadiusData rd, javajs.util.BS bsSelected)

Methods inherited from class org.jmol.shape.AtomShape
checkColixLength, getInfoAsString, initModelSet, setColixAndPalette, setPropAS, setSize, setSize2, setSizeRD2

Methods inherited from class org.jmol.shape.Shape
appendCmd, checkBoundsMinMax, checkObjectClicked, checkObjectDragged, checkObjectHovered, coordinateInRange, encodeColor, findNearestAtomIndex, getColix, getColixA, getColixB, getColixI, getColorCommand, getColorCommandUnk, getFontCommand, getIndexFromName, getProperty, getPropertyData, getPropShape, getShapeDetail, getSizeG, getTranslucentLabel, initializeShape, replaceGroup, setModelSet, setModelVisibilityFlags, setPropS, setShapeSizeRD, wasClicked

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details
- ec
  
  public EnvelopeCalculation ec
- isSurface
  
  public boolean isSurface
- SURFACE_DISTANCE_FOR_CALCULATION
  
  static final float SURFACE_DISTANCE_FOR_CALCULATION
  See Also:
  
  Constant Field Values
- bsOn
  
  javajs.util.BS bsOn
- bsSelected
  
  private javajs.util.BS bsSelected
- bsIgnore
  
  private javajs.util.BS bsIgnore
- MAX_LEVEL
  
  public static int MAX_LEVEL
- thisAtom
  
  int thisAtom
- thisRadius
  
  float thisRadius
- thisArgb
  
  int thisArgb
- rdLast
  
  RadiusData rdLast
Constructor Details
- Dots
  
  public Dots()
Method Details
- initShape
  
  public void initShape()
  
  Overrides:
  
  initShape in class AtomShape
- getSize
  
  public int getSize(int atomIndex)
  
  Description copied from class: Shape
  
  overridden in Dots, CGOMesh, and AtomShape
  
  Overrides:
  
  getSize in class AtomShape
  
  Returns:
  
  size
- setProperty
  
  public void setProperty(String propertyName, Object value, javajs.util.BS bs)
  
  Specified by:
  
  setProperty in class Shape
- initialize
  
  void initialize()
- setSizeRD
  
  protected void setSizeRD(RadiusData rd, javajs.util.BS bsSelected)
  
  Overrides:
  
  setSizeRD in class AtomShape
- setAtomClickability
  
  public void setAtomClickability()
  
  Overrides:
  
  setAtomClickability in class AtomShape
- getShapeState
  
  public String getShapeState()
  
  Overrides:
  
  getShapeState in class AtomShape

Class Dots

Field Summary

Fields inherited from class org.jmol.shape.AtomShape

Fields inherited from class org.jmol.shape.Shape

Constructor Summary

Method Summary

Methods inherited from class org.jmol.shape.AtomShape

Methods inherited from class org.jmol.shape.Shape

Methods inherited from class java.lang.Object

Field Details

ec

isSurface

SURFACE_DISTANCE_FOR_CALCULATION

bsOn

bsSelected

bsIgnore

MAX_LEVEL

thisAtom

thisRadius

thisArgb

rdLast

Constructor Details

Dots

Method Details

initShape

getSize

setProperty

initialize

setSizeRD

setAtomClickability

getShapeState