Package org.jmol.shape

Class Mesh

java.lang.Object
org.jmol.util.MeshSurface
org.jmol.shape.Mesh
Direct Known Subclasses:
DrawMesh, IsosurfaceMesh
public class Mesh extends MeshSurface

  • Field Details

    • PREVIOUS_MESH_ID

      public static final String PREVIOUS_MESH_ID
      See Also:

    • title

      public String[] title

    • meshColix

      public short meshColix

    • normixes

      public short[] normixes

    • lineData

      public javajs.util.Lst<javajs.util.P3[]> lineData

    • thisID

      public String thisID

    • isValid

      public boolean isValid

    • scriptCommand

      public String scriptCommand

    • colorCommand

      public String colorCommand

    • lattice

      public javajs.util.P3 lattice

    • symops

      public javajs.util.M4[] symops

    • symopNormixes

      public short[][] symopNormixes

    • visible

      public boolean visible

    • lighting

      public int lighting

    • colorType

      public int colorType

    • reverseColor

      public boolean reverseColor

    • haveXyPoints

      public boolean haveXyPoints

    • diameter

      public int diameter

    • width

      public float width

    • ptCenter

      public javajs.util.P3 ptCenter

    • linkedMesh

      public Mesh linkedMesh

    • vertexColorMap

      public Map<String,javajs.util.BS> vertexColorMap

    • vAB

      public javajs.util.V3 vAB

    • vTemp

      public javajs.util.V3 vTemp

    • color

      public int color

    • useColix

      public boolean useColix

    • unitCell

      public SymmetryInterface unitCell

    • scale3d

      public float scale3d

    • index

      public int index

    • atomIndex

      public int atomIndex

    • modelIndex

      public int modelIndex

    • visibilityFlags

      public int visibilityFlags

    • insideOut

      public boolean insideOut

    • checkByteCount

      public int checkByteCount

    • normalsInverted

      private boolean normalsInverted

    • showContourLines

      public boolean showContourLines

    • showPoints

      public boolean showPoints

    • drawTriangles

      public boolean drawTriangles

    • fillTriangles

      public boolean fillTriangles

    • showTriangles

      public boolean showTriangles

    • frontOnly

      public boolean frontOnly

    • isShell

      public boolean isShell

    • isTwoSided

      public boolean isTwoSided

    • havePlanarContours

      public boolean havePlanarContours

    • bsTemp

      protected javajs.util.BS bsTemp

    • colorDensity

      public boolean colorDensity

    • cappingObject

      public Object cappingObject

    • slabbingObject

      public Object slabbingObject

    • volumeRenderPointSize

      public float volumeRenderPointSize

    • connectedAtoms

      public int[] connectedAtoms

    • isModelConnected

      public boolean isModelConnected

    • recalcAltVertices

      public boolean recalcAltVertices

    • symopColixes

      public short[] symopColixes

  • Constructor Details

    • Mesh

      public Mesh()
      always use Mesh().mesh1(thisID, colix, index)

  • Method Details

    • setVisibilityFlags

      public void setVisibilityFlags(int n)

    • mesh1

      public Mesh mesh1(Viewer vwr, String thisID, short colix, int index)

    • clear

      public void clear(String meshType)

    • clearMesh

      public void clearMesh(String meshType)

    • initialize

      public void initialize(int lighting, javajs.util.T3[] vertices, javajs.util.P4 plane)

    • setNormixes

      public short[] setNormixes(javajs.util.V3[] normals)

    • getNormals

      public javajs.util.V3[] getNormals(javajs.util.T3[] vertices, javajs.util.P4 plane)

    • setLighting

      public void setLighting(int lighting)

    • flipLighting

      private void flipLighting(int lighting)

    • invertNormixes

      private void invertNormixes()

    • setTranslucent

      public void setTranslucent(boolean isTranslucent, float iLevel)

    • sumVertexNormals

      protected void sumVertexNormals(javajs.util.T3[] vertices, javajs.util.V3[] normals)

    • sumVertexNormals2

      protected static void sumVertexNormals2(Mesh m, javajs.util.T3[] vertices, javajs.util.V3[] normals)

    • getMinDistance2ForVertexGrouping

      protected float getMinDistance2ForVertexGrouping()

    • getState

      public String getState(String type)

    • getRendering

      protected String getRendering()

    • getOffsetVertices

      public javajs.util.P3[] getOffsetVertices(javajs.util.P4 thePlane)

    • setShowWithin

      public void setShowWithin(javajs.util.Lst<javajs.util.P3> showWithinPoints, float showWithinDistance2, boolean isWithinNot)
      Parameters:
      showWithinPoints -
      showWithinDistance2 -
      isWithinNot -

    • checkWithin

      public static boolean checkWithin(javajs.util.T3 pti, javajs.util.Lst<javajs.util.P3> withinPoints, float withinDistance2, boolean isWithinNot)

    • getVertexIndexFromNumber

      public int getVertexIndexFromNumber(int vertexIndex)

    • getVisibleVertexBitSet

      public javajs.util.BS getVisibleVertexBitSet()

    • getVisibleVBS

      protected javajs.util.BS getVisibleVBS()

    • setTokenProperty

      public void setTokenProperty(int tokProp, boolean bProp)

    • getInfo

      protected Object getInfo(boolean isAll)

    • nonNullBS

      private static javajs.util.BS nonNullBS(javajs.util.BS bsSlabDisplay, int[][] pis, int pc)

    • nonNull

      private static int[][] nonNull(int[][] pis, int pc)

    • getBoundingBox

      public javajs.util.P3[] getBoundingBox()

    • getUnitCell

      public SymmetryInterface getUnitCell()
      Returns:
      unitcell

    • rotateTranslate

      public void rotateTranslate(javajs.util.Quat q, javajs.util.T3 offset, boolean isAbsolute)

    • getNormalsTemp

      public javajs.util.V3[] getNormalsTemp()