Package org.jmol.renderbio

Class BioMeshRenderer

java.lang.Object
org.jmol.render.ShapeRenderer
org.jmol.render.MeshRenderer
org.jmol.renderbio.BioMeshRenderer
public class BioMeshRenderer extends MeshRenderer

  • Field Details

    • meshes

      private Mesh[] meshes

    • meshReady

      private boolean[] meshReady

    • bsRenderMesh

      private javajs.util.BS bsRenderMesh

    • bsr

      private BioShapeRenderer bsr

    • doCap0

      private boolean doCap0

    • doCap1

      private boolean doCap1

    • ABSOLUTE_MIN_MESH_SIZE

      private static final int ABSOLUTE_MIN_MESH_SIZE
      See Also:

    • MIN_MESH_RENDER_SIZE

      private static final int MIN_MESH_RENDER_SIZE
      See Also:

    • controlHermites

      private javajs.util.P3[] controlHermites

    • wingHermites

      private javajs.util.V3[] wingHermites

    • radiusHermites

      private javajs.util.P3[] radiusHermites

    • norm

      private javajs.util.V3 norm

    • wing

      private final javajs.util.V3 wing

    • wing1

      private final javajs.util.V3 wing1

    • wingT

      private final javajs.util.V3 wingT

    • aa

      private final javajs.util.A4 aa

    • pt

      private final javajs.util.P3 pt

    • pt1

      private final javajs.util.P3 pt1

    • ptPrev

      private final javajs.util.P3 ptPrev

    • ptNext

      private final javajs.util.P3 ptNext

    • mat

      private final javajs.util.M3 mat

    • MODE_TUBE

      private static final int MODE_TUBE
      See Also:

    • MODE_FLAT

      private static final int MODE_FLAT
      See Also:

    • MODE_ELLIPTICAL

      private static final int MODE_ELLIPTICAL
      See Also:

    • MODE_NONELLIPTICAL

      private static final int MODE_NONELLIPTICAL
      See Also:

    • bsTemp

      private javajs.util.BS bsTemp

    • norml

      private final javajs.util.V3 norml

  • Constructor Details

    • BioMeshRenderer

      public BioMeshRenderer()

  • Method Details

    • render

      protected boolean render()
      Specified by:
      render in class ShapeRenderer

    • initialize

      public void initialize(ShapeRenderer bsr, BioShape bioShape, int monomerCount)

    • renderBioMesh

      private void renderBioMesh(Mesh mesh)

    • setFancyRibbon

      public void setFancyRibbon(int i)

    • setFancyConic

      public void setFancyConic(int i, int tension)

    • setFancyArrowHead

      public void setFancyArrowHead(int i)

    • createMesh

      private boolean createMesh(int i, int madBeg, int madMid, int madEnd, float aspectRatio, int tension)
      Cartoon meshes are triangulated objects.
      Parameters:
      i -
      madBeg -
      madMid -
      madEnd -
      aspectRatio -
      tension -
      Returns:
      true if deferred rendering is required due to normals averaging

    • adjustCartoonSeamNormals

      void adjustCartoonSeamNormals(int i, int nPer)
      Matches normals for adjacent mesh sections to create a seamless overall mesh. We use temporary normals here. We will convert normals to normixes later.
      Parameters:
      i -
      nPer -

    • renderMeshes

      public void renderMeshes()

    • initBS

      public void initBS()

    • check

      public boolean check(boolean doCap0, boolean doCap1)

    • checkDiameter

      private boolean checkDiameter(int d)