Package org.jmol.modelset

Class Measurement

java.lang.Object
org.jmol.modelset.Measurement
Direct Known Subclasses:
MeasurementPending
public class Measurement extends Object

  • Field Details

    • thisID

      public String thisID

    • ms

      public ModelSet ms

    • index

      public int index

    • isVisible

      public boolean isVisible

    • isHidden

      public boolean isHidden

    • isTrajectory

      public boolean isTrajectory

    • isValid

      public boolean isValid

    • colix

      public short colix

    • labelColix

      public short labelColix

    • mad

      public int mad

    • tickInfo

      public TickInfo tickInfo

    • traceX

      public int traceX

    • traceY

      public int traceY

    • count

      public int count

    • countPlusIndices

      public int[] countPlusIndices

    • pts

      public Point3fi[] pts

    • value

      public float value

    • property

      public String property

    • strFormat

      String strFormat

    • units

      String units

    • text

      public Text text

    • vwr

      private Viewer vwr

    • strMeasurement

      private String strMeasurement

    • type

      private String type

    • tainted

      private boolean tainted

    • renderAxis

      public javajs.util.A4 renderAxis

    • renderArc

      public javajs.util.P3 renderArc

    • newUnits

      private String newUnits

    • fixedValue

      public float fixedValue

    • isPending

      private boolean isPending

    • inFront

      public boolean inFront

    • useDefaultLabel

      private boolean useDefaultLabel

    • NMR_NOT

      public static final int NMR_NOT
      See Also:

    • NMR_DC

      public static final int NMR_DC
      See Also:

    • NMR_JC

      public static final int NMR_JC
      See Also:

    • NMR_NOE_OR_J

      public static final int NMR_NOE_OR_J
      See Also:

  • Constructor Details

    • Measurement

      public Measurement()

  • Method Details

    • isTainted

      public boolean isTainted()

    • setM

      public Measurement setM(ModelSet modelSet, Measurement m, float value, short colix, String strFormat, int index)

    • setPoints

      public Measurement setPoints(ModelSet modelSet, int[] indices, Point3fi[] points, TickInfo tickInfo)

    • setCount

      public void setCount(int count)

    • setCountM

      protected void setCountM(int count)

    • getAtomIndex

      public int getAtomIndex(int n)

    • getAtom

      public Point3fi getAtom(int n)

    • getLastIndex

      public int getLastIndex()

    • getString

      public String getString()

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • getStringUsing

      String getStringUsing(Viewer vwr, String strFormat, String units)

    • getStringDetail

      public String getStringDetail()

    • refresh

      public void refresh(Point3fi[] pts)

    • getMeasurementScript

      public String getMeasurementScript(String sep, boolean withModelIndex)
      Used by MouseManager and Picking Manager to build the script
      Parameters:
      sep -
      withModelIndex - is needed for points only
      Returns:
      ((1}) ({2})....

    • formatMeasurementAs

      public void formatMeasurementAs(String strFormat, String units, boolean useDefault)

    • formatMeasurement

      public void formatMeasurement(String units)

    • reformatDistanceIfSelected

      public void reformatDistanceIfSelected()

    • formatDistance

      private String formatDistance(String units)
      Parameters:
      units - from MEASURE or measure()
      Returns:
      format

    • fixValue

      public float fixValue(String units, boolean andRound)
      Parameters:
      units - final units
      andRound -
      Returns:
      float value

    • checkJ

      private void checkJ(String units)

    • nmrType

      public static int nmrType(String units)

    • formatAngle

      private String formatAngle(float angle)

    • getLabelString

      private String getLabelString()

    • formatString

      private String formatString(float value, String units, String label)

    • sameAsPoints

      public boolean sameAsPoints(int[] indices, Point3fi[] points)

    • sameAsIJ

      private boolean sameAsIJ(int[] atoms, Point3fi[] points, int i, int j)

    • sameAs

      public boolean sameAs(int i, int j)

    • getPropMeasurement

      public float getPropMeasurement(Point3fi[] pts)

    • getMeasurement

      public float getMeasurement(Point3fi[] pts)

    • getLabel

      public String getLabel(int i, boolean asBitSet, boolean withModelIndex)

    • setModelIndex

      public void setModelIndex(short modelIndex)

    • isValid

      public boolean isValid()

    • find

      public static int find(javajs.util.Lst<Measurement> measurements, Measurement m)

    • isConnected

      public boolean isConnected(Atom[] atoms, int count)

    • getInfoAsString

      public String getInfoAsString(String units)

    • isInRange

      public boolean isInRange(RadiusData radiusData, float value)

    • isIntramolecular

      public boolean isIntramolecular(Atom[] atoms, int count)

    • isMin

      public boolean isMin(Map<String,Integer> htMin)

    • isUnits

      public static boolean isUnits(String s)

    • toUnits

      public static float toUnits(float dist, String units, boolean andRound)

    • fromUnits

      public static float fromUnits(float dist, String units)

    • fixUnits

      public static String fixUnits(String u)

    • getStrFormatForState

      public String getStrFormatForState()

    • setFromMD

      public void setFromMD(MeasurementData md, boolean andText)