Package org.jmol.jvxl.readers

Class VolumeDataReader

java.lang.Object
org.jmol.jvxl.readers.SurfaceReader
org.jmol.jvxl.readers.VolumeDataReader
All Implemented Interfaces:
VertexDataServer
Direct Known Subclasses:
AtomDataReader, IsoShapeReader
class VolumeDataReader extends SurfaceReader

  • Field Details

    • dataType

      protected int dataType

    • precalculateVoxelData

      protected boolean precalculateVoxelData

    • allowMapData

      protected boolean allowMapData

    • point

      protected javajs.util.P3 point

    • ptsPerAngstrom

      protected float ptsPerAngstrom

    • maxGrid

      protected int maxGrid

    • useOriginStepsPoints

      protected boolean useOriginStepsPoints

  • Constructor Details

    • VolumeDataReader

      VolumeDataReader()

  • Method Details

    • init

      void init(SurfaceGenerator sg)
      Description copied from class: SurfaceReader
      implemented in SurfaceFileReader and
      Specified by:
      init in class SurfaceReader

    • initVDR

      protected void initVDR(SurfaceGenerator sg)

    • setup

      void setup(boolean isMapData)
      Parameters:
      isMapData -

    • readVolumeParameters

      protected boolean readVolumeParameters(boolean isMapData)
      Specified by:
      readVolumeParameters in class SurfaceReader

    • readVolumeData

      protected boolean readVolumeData(boolean isMapData)
      Specified by:
      readVolumeData in class SurfaceReader

    • readVoxelDataIndividually

      protected void readVoxelDataIndividually(boolean isMapData) throws Exception
      Throws:
      Exception

    • setVolumeData

      protected void setVolumeData()

    • setVolumeDataParams

      protected boolean setVolumeDataParams()

    • showGridInfo

      protected void showGridInfo()

    • setVoxelRange

      protected int setVoxelRange(int index, float min, float max, float ptsPerAngstrom, int gridMax, float minPointsPerAngstrom)
      Parameters:
      index -
      min -
      max -
      ptsPerAngstrom -
      gridMax -
      minPointsPerAngstrom - -- necessary for highly prolate models such a 6ef8
      Returns:
      number of grid points total

    • readSurfaceData

      protected void readSurfaceData(boolean isMapData) throws Exception
      Specified by:
      readSurfaceData in class SurfaceReader
      Throws:
      Exception

    • readSurfaceDataVDR

      protected void readSurfaceDataVDR(boolean isMapData) throws Exception
      Throws:
      Exception

    • generateCube

      protected void generateCube()

    • closeReader

      protected void closeReader()
      Specified by:
      closeReader in class SurfaceReader