Class JvxlReader

Method Details

• init2

  void init2(SurfaceGenerator sg, BufferedReader br)

  Overrides:

  init2 in class JvxlXmlReader

• readParameters

  protected void readParameters() throws Exception

  Overrides:

  readParameters in class JvxlXmlReader

  Throws:

  Exception

• jvxlReadFractionData

  protected String jvxlReadFractionData(String type, int nPoints)

  Description copied from class: JvxlXmlReader

  "edge" data includes two parts -- a compressed bitset indicating exactly which edges, in order or processing by Jmol, are crossed by the surface, and a set of fractions indicating how far along that edge (good to 1 part in 8100) that surface crosses that edge. We are just reading he fractions here. "color" data comprises the corresponding sequence of data mapping values, again stored to a precision of 1 part in 8100, relative to a range of values.

  Overrides:

  jvxlReadFractionData in class JvxlXmlReader

  Returns:

  data

• gotoData

  protected void gotoData(int n, int nPoints) throws Exception

  Overrides:

  gotoData in class JvxlXmlReader

  Throws:

  Exception

• jvxlReadDefinitionLine

  private void jvxlReadDefinitionLine(boolean showMsg) throws Exception

  Throws:

  Exception

• readSurfaceData

  protected void readSurfaceData(boolean isMapDataIgnored) throws Exception

  Overrides:

  readSurfaceData in class JvxlXmlReader

  Throws:

  Exception

• jvxlSkipData

  protected void jvxlSkipData(int nPoints, boolean doSkipColorData) throws Exception

  Overrides:

  jvxlSkipData in class JvxlXmlReader

  Throws:

  Exception

• jvxlSkipDataBlock

  private void jvxlSkipDataBlock(int nPoints, boolean isInt) throws Exception

  Throws:

  Exception

• countData

  private int countData(String str)