Package org.jmol.jvxl.data

Class JvxlData

java.lang.Object
org.jmol.jvxl.data.JvxlData
public class JvxlData extends Object

  • Field Details

    • msg

      public String msg

    • wasJvxl

      public boolean wasJvxl

    • wasCubic

      public boolean wasCubic

    • jvxlFileSource

      public String jvxlFileSource

    • jvxlFileTitle

      public String jvxlFileTitle

    • jvxlFileMessage

      public String jvxlFileMessage

    • jvxlSurfaceData

      public String jvxlSurfaceData

    • jvxlEdgeData

      public String jvxlEdgeData

    • jvxlColorData

      public String jvxlColorData

    • jvxlVolumeDataXml

      public String jvxlVolumeDataXml

    • jvxlExcluded

      public javajs.util.BS[] jvxlExcluded

    • jvxlPlane

      public javajs.util.P4 jvxlPlane

    • isJvxlPrecisionColor

      public boolean isJvxlPrecisionColor

    • jvxlDataIsColorMapped

      public boolean jvxlDataIsColorMapped

    • jvxlDataIs2dContour

      public boolean jvxlDataIs2dContour

    • jvxlDataIsColorDensity

      public boolean jvxlDataIsColorDensity

    • isColorReversed

      public boolean isColorReversed

    • thisSet

      public javajs.util.BS thisSet

    • edgeFractionBase

      public int edgeFractionBase

    • edgeFractionRange

      public int edgeFractionRange

    • colorFractionBase

      public int colorFractionBase

    • colorFractionRange

      public int colorFractionRange

    • isValid

      public boolean isValid

    • insideOut

      public boolean insideOut

    • isXLowToHigh

      public boolean isXLowToHigh

    • isContoured

      public boolean isContoured

    • isBicolorMap

      public boolean isBicolorMap

    • isTruncated

      public boolean isTruncated

    • isCutoffAbsolute

      public boolean isCutoffAbsolute

    • isModelConnected

      public boolean isModelConnected

    • vertexDataOnly

      public boolean vertexDataOnly

    • mappedDataMin

      public float mappedDataMin

    • mappedDataMax

      public float mappedDataMax

    • valueMappedToRed

      public float valueMappedToRed

    • valueMappedToBlue

      public float valueMappedToBlue

    • cutoff

      public float cutoff

    • cutoffRange

      public float[] cutoffRange

    • pointsPerAngstrom

      public float pointsPerAngstrom

    • nPointsX

      public int nPointsX

    • nPointsY

      public int nPointsY

    • nPointsZ

      public int nPointsZ

    • nBytes

      public long nBytes

    • nContours

      public int nContours

    • nEdges

      public int nEdges

    • nSurfaceInts

      public int nSurfaceInts

    • vertexCount

      public int vertexCount

    • vContours

      public javajs.util.Lst<Object>[] vContours

    • contourColixes

      public short[] contourColixes

    • contourColors

      public String contourColors

    • contourValues

      public float[] contourValues

    • contourValuesUsed

      public float[] contourValuesUsed

    • thisContour

      public int thisContour

    • scale3d

      public float scale3d

    • minColorIndex

      public short minColorIndex

    • maxColorIndex

      public short maxColorIndex

    • title

      public String[] title

    • version

      public String version

    • boundingBox

      public javajs.util.P3[] boundingBox

    • excludedTriangleCount

      public int excludedTriangleCount

    • excludedVertexCount

      public int excludedVertexCount

    • colorDensity

      public boolean colorDensity

    • pointSize

      public float pointSize

    • moleculeXml

      public String moleculeXml

    • dataMin

      public float dataMin

    • dataMax

      public float dataMax

    • saveVertexCount

      public int saveVertexCount

    • vertexColorMap

      public Map<String,javajs.util.BS> vertexColorMap

    • nVertexColors

      public int nVertexColors

    • vertexColors

      public int[] vertexColors

    • color

      public String color

    • meshColor

      public String meshColor

    • translucency

      public float translucency

    • colorScheme

      public String colorScheme

    • rendering

      public String rendering

    • slabValue

      public int slabValue

    • isSlabbable

      public boolean isSlabbable

    • diameter

      public int diameter

    • slabInfo

      public String slabInfo

    • allowVolumeRender

      public boolean allowVolumeRender

    • voxelVolume

      public float voxelVolume

    • mapLattice

      public javajs.util.P3 mapLattice

    • fixedLattice

      public javajs.util.P3 fixedLattice

    • baseColor

      public String baseColor

    • integration

      public float integration

    • sbOut

      public javajs.util.SB sbOut

  • Constructor Details

    • JvxlData

      public JvxlData()

  • Method Details

    • clear

      public void clear()

    • setSurfaceInfo

      public void setSurfaceInfo(javajs.util.P4 thePlane, javajs.util.P3 mapLattice, int nSurfaceInts, String surfaceData)

    • setSurfaceInfoFromBitSet

      public void setSurfaceInfoFromBitSet(javajs.util.BS bs, javajs.util.P4 thePlane)

    • setSurfaceInfoFromBitSetPts

      public void setSurfaceInfoFromBitSetPts(javajs.util.BS bs, javajs.util.P4 thePlane, javajs.util.P3 mapLattice)

    • jvxlUpdateInfo

      public void jvxlUpdateInfo(String[] title, long nBytes)

    • updateSurfaceData

      public static String updateSurfaceData(String edgeData, float[] vertexValues, int vertexCount, int vertexIncrement, char isNaN)