Package org.jmol.jvxl.calc

Class MarchingCubes

java.lang.Object
org.jmol.util.TriangleData
org.jmol.jvxl.calc.MarchingCubes
Direct Known Subclasses:
SimpleMarchingCubes
public class MarchingCubes extends TriangleData

  • Field Details

    • surfaceReader

      protected VertexDataServer surfaceReader

    • volumeData

      protected VolumeData volumeData

    • contourType

      protected int contourType

    • isContoured

      protected boolean isContoured

    • cutoff

      protected float cutoff

    • isCutoffAbsolute

      protected boolean isCutoffAbsolute

    • isSquared

      protected boolean isSquared

    • isXLowToHigh

      protected boolean isXLowToHigh

    • cubeCountX

      protected int cubeCountX

    • cubeCountY

      protected int cubeCountY

    • cubeCountZ

      protected int cubeCountZ

    • nY

      protected int nY

    • nZ

      protected int nZ

    • yzCount

      protected int yzCount

    • colorDensity

      protected boolean colorDensity

    • integrateSquared

      protected boolean integrateSquared

    • bsVoxels

      public javajs.util.BS bsVoxels

    • bsExcludedVertices

      protected javajs.util.BS bsExcludedVertices

    • bsExcludedTriangles

      protected javajs.util.BS bsExcludedTriangles

    • bsExcludedPlanes

      protected javajs.util.BS bsExcludedPlanes

    • edgeData

      protected javajs.util.SB edgeData

    • excludePartialCubes

      private boolean excludePartialCubes

    • isDensityRange

      private boolean isDensityRange

    • mode

      protected int mode

    • MODE_CUBE

      protected static final int MODE_CUBE
      See Also:

    • MODE_JVXL

      protected static final int MODE_JVXL
      See Also:

    • MODE_PLANES

      protected static final int MODE_PLANES
      See Also:

    • vertexValues

      protected final float[] vertexValues

    • edgeCount

      protected int edgeCount

    • voxelVertexVectors

      protected final javajs.util.V3[] voxelVertexVectors

    • edgeVectors

      protected final javajs.util.V3[] edgeVectors

    • yzPlanePts

      protected static int[] yzPlanePts

    • edgePointIndexes

      protected final int[] edgePointIndexes

    • isoPointIndexPlanes

      protected int[][][] isoPointIndexPlanes

    • yzPlanes

      protected float[][] yzPlanes

    • mappingPlane

      private javajs.util.P4 mappingPlane

    • allInside

      private boolean allInside

    • isInside

      private boolean isInside

    • offset

      private javajs.util.P3i offset

    • voxelData

      private float[][][] voxelData

    • nTriangles

      protected int nTriangles

    • bsValues

      protected javajs.util.BS bsValues

    • pt0

      protected final javajs.util.P3 pt0

    • pointA

      protected final javajs.util.P3 pointA

    • edgeVertexPointersLowToHigh

      protected static final int[] edgeVertexPointersLowToHigh

    • edgeVertexPointersHighToLow

      protected static final int[] edgeVertexPointersHighToLow

    • edgeVertexPointers

      protected int[] edgeVertexPointers

    • edgeVertexPlanesLowToHigh

      protected static final int[] edgeVertexPlanesLowToHigh

    • edgeVertexPlanesHighToLow

      protected static final int[] edgeVertexPlanesHighToLow

    • edgeVertexPlanes

      protected int[] edgeVertexPlanes

    • fReturn

      protected float[] fReturn

    • cubeVertexVectors

      protected static final javajs.util.V3[] cubeVertexVectors

    • edgeTypeTable

      protected static final int[] edgeTypeTable

    • linearOffsets

      protected final int[] linearOffsets

    • insideMaskTable

      protected static final short[] insideMaskTable

  • Constructor Details

  • Method Details

    • setParameters

      protected void setParameters(VolumeData volumeData, Parameters params)

    • calcVoxelVertexVectors

      protected void calcVoxelVertexVectors()

    • resetIndexPlane

      protected int[][] resetIndexPlane(int[][] plane)

    • getEdgeData

      public String getEdgeData()

    • getValue

      private float getValue(int x, int y, int z, int pt, int i)

    • getPlane

      private void getPlane(int i, boolean andSwap)

    • processTriangles

      protected void processTriangles(int insideMask)

    • addVertex

      protected void addVertex(int x, int y, int z, int pti, float value)

    • addTriangle

      protected void addTriangle(int ia, int ib, int ic, int edgeType)

    • getValueArray

      protected float getValueArray(int x, int y, int z, int pt, float[] tempValues)

    • isInside

      public static boolean isInside(float voxelValue, float max, boolean isAbsolute)

    • processOneCubical

      protected boolean processOneCubical(int insideMask, int x, int y, int z, int pt)

    • addEdgeData

      protected void addEdgeData(float f)

    • calcVertexPoint

      public void calcVertexPoint(int x, int y, int z, int vertex, javajs.util.P3 pt)

    • setLinearOffsets

      protected void setLinearOffsets()

    • getLinearOffset

      public int getLinearOffset(int x, int y, int z, int offset)