htsjdk.variant.variantcontext.writer.BCF2FieldWriter

Direct Known Subclasses:: BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.SiteWriter

public abstract class BCF2FieldWriter extends Object

See #BCFWriter for documentation on this classes role in encoding BCF2 files

Constructor Details
- BCF2FieldWriter
  
  protected BCF2FieldWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)
Method Details
- getHeader
  
  protected VCFHeader getHeader()
- getFieldEncoder
  
  protected BCF2FieldEncoder getFieldEncoder()
- getField
  
  protected String getField()
- start
  
  public void start(BCF2Encoder encoder, VariantContext vc) throws IOException
  
  Throws:
  
  IOException
- done
  
  public void done(BCF2Encoder encoder, VariantContext vc) throws IOException
  
  Throws:
  
  IOException
- toString
  
  public String toString()
  
  Overrides:
  
  toString in class Object

Class BCF2FieldWriter

Nested Class Summary