SnpFilter (htsjdk 3.0.4 API)

java.lang.Object

htsjdk.variant.variantcontext.filter.SnpFilter

All Implemented Interfaces:: VariantContextFilter, Predicate<VariantContext>

public class SnpFilter extends Object implements VariantContextFilter

A Predicate on VariantContexts that returns true at sites that are SNPs

Constructor Summary

Constructors

Constructor

Description

SnpFilter()
Method Summary

Modifier and Type

Method

Description

boolean

test(VariantContext variantContext)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.function.Predicate
and, negate, or

Constructor Details
- SnpFilter
  
  public SnpFilter()
Method Details
- test
  
  public boolean test(VariantContext variantContext)
  
  Specified by:
  
  test in interface Predicate<VariantContext>
  
  Parameters:
  
  variantContext - the record to examine for being a SNP
  
  Returns:
  
  true if variantContext is a SNP