htsjdk.tribble.index.tabix.StreamBasedTabixIndexCreator

public class StreamBasedTabixIndexCreator extends AllRefsTabixIndexCreator

A TabixIndexCreator that can write to an output stream.

Constructor Details
- StreamBasedTabixIndexCreator
  
  public StreamBasedTabixIndexCreator(SAMSequenceDictionary sequenceDictionary, TabixFormat formatSpec, OutputStream out)
Method Details
- finalizeIndex
  
  public Index finalizeIndex(long finalFilePosition)
  
  Description copied from interface: IndexCreator
  
  Create the index, given the stream of features passed in to this point
  
  Specified by:
  
  finalizeIndex in interface IndexCreator
  
  Overrides:
  
  finalizeIndex in class AllRefsTabixIndexCreator
  
  Parameters:
  
  finalFilePosition - the final file position, for indexes that have to close out with the final position
  
  Returns:
  
  an index object

Class StreamBasedTabixIndexCreator

Constructor Summary