Package htsjdk.tribble

Class Tribble

java.lang.Object
htsjdk.tribble.Tribble
public class Tribble extends Object
Common, tribble wide constants and static functions

  • Field Details

  • Method Details

    • indexFile

      public static String indexFile(String filename)
      Return the name of the index file for the provided filename Does not actually create an index
      Parameters:
      filename - name of the file
      Returns:
      non-null String representing the index filename

    • indexFile

      public static File indexFile(File file)
      Return the File of the index file for the provided file Does not actually create an index
      Parameters:
      file - the file
      Returns:
      a non-null File representing the index

    • indexPath

      public static Path indexPath(Path path)
      Return the name of the index file for the provided path Does not actually create an index
      Parameters:
      path - the path
      Returns:
      Path representing the index filename

    • tabixIndexFile

      public static String tabixIndexFile(String filename)
      Return the name of the tabix index file for the provided filename Does not actually create an index
      Parameters:
      filename - name of the file
      Returns:
      non-null String representing the index filename

    • tabixIndexFile

      public static File tabixIndexFile(File file)
      Return the File of the tabix index file for the provided file Does not actually create an index
      Parameters:
      file - the file
      Returns:
      a non-null File representing the index

    • tabixIndexPath

      public static Path tabixIndexPath(Path path)
      Return the name of the tabix index file for the provided path Does not actually create an index
      Parameters:
      path - the path
      Returns:
      Path representing the index filename